Hb_002498_150

Information

Type -
Description -
Location Contig2498: 84531-93965
Sequence    

Annotation

kegg
ID rcu:RCOM_0903820
description hypothetical protein
nr
ID XP_002518454.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O65451
description Probable F-box protein At4g22030 OS=Arabidopsis thaliana GN=At4g22030 PE=4 SV=1
trembl
ID B9RXI5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0903820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002498_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_027337_050 0.2078032787 - - polyprotein [Citrus endogenous pararetrovirus]
3 Hb_130579_050 0.214210252 - - hypothetical protein JCGZ_25577 [Jatropha curcas]
4 Hb_002025_240 0.2174801034 - - -
5 Hb_004191_030 0.2195057067 - - hypothetical protein POPTR_0013s13140g [Populus trichocarpa]
6 Hb_001899_040 0.221979606 - - PREDICTED: cyclic nucleotide-gated ion channel 2-like [Jatropha curcas]
7 Hb_002571_050 0.2260322851 - - PREDICTED: cation/calcium exchanger 1 [Jatropha curcas]
8 Hb_003727_060 0.2266581238 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_002056_140 0.227856416 - - -
10 Hb_000002_280 0.2286234308 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
11 Hb_000300_240 0.2299565948 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
12 Hb_000243_310 0.2323814805 - - lactoylglutathione lyase, putative [Ricinus communis]
13 Hb_095449_010 0.2343808834 - - PREDICTED: low-temperature-induced 65 kDa protein-like [Jatropha curcas]
14 Hb_004063_010 0.2359421754 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_003442_120 0.2367846336 - - hypothetical protein VITISV_019818 [Vitis vinifera]
16 Hb_005852_010 0.2376646771 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_118046_010 0.2411292251 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
18 Hb_000574_090 0.2420601653 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
19 Hb_038190_030 0.244329792 - - -
20 Hb_001205_170 0.2485774015 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002498_150 Hb_002498_150 Hb_027337_050 Hb_027337_050 Hb_002498_150--Hb_027337_050 Hb_130579_050 Hb_130579_050 Hb_002498_150--Hb_130579_050 Hb_002025_240 Hb_002025_240 Hb_002498_150--Hb_002025_240 Hb_004191_030 Hb_004191_030 Hb_002498_150--Hb_004191_030 Hb_001899_040 Hb_001899_040 Hb_002498_150--Hb_001899_040 Hb_002571_050 Hb_002571_050 Hb_002498_150--Hb_002571_050 Hb_027337_050--Hb_001899_040 Hb_027337_050--Hb_130579_050 Hb_172426_010 Hb_172426_010 Hb_027337_050--Hb_172426_010 Hb_027337_050--Hb_002025_240 Hb_001205_170 Hb_001205_170 Hb_027337_050--Hb_001205_170 Hb_003727_060 Hb_003727_060 Hb_027337_050--Hb_003727_060 Hb_130579_050--Hb_002025_240 Hb_003442_120 Hb_003442_120 Hb_130579_050--Hb_003442_120 Hb_118046_010 Hb_118046_010 Hb_130579_050--Hb_118046_010 Hb_004063_010 Hb_004063_010 Hb_130579_050--Hb_004063_010 Hb_130579_050--Hb_003727_060 Hb_000028_270 Hb_000028_270 Hb_130579_050--Hb_000028_270 Hb_002025_240--Hb_003442_120 Hb_002025_240--Hb_118046_010 Hb_002025_240--Hb_004063_010 Hb_002025_240--Hb_003727_060 Hb_005852_010 Hb_005852_010 Hb_004191_030--Hb_005852_010 Hb_002056_140 Hb_002056_140 Hb_004191_030--Hb_002056_140 Hb_000300_240 Hb_000300_240 Hb_004191_030--Hb_000300_240 Hb_151411_010 Hb_151411_010 Hb_004191_030--Hb_151411_010 Hb_071998_010 Hb_071998_010 Hb_004191_030--Hb_071998_010 Hb_034909_010 Hb_034909_010 Hb_004191_030--Hb_034909_010 Hb_001899_040--Hb_002571_050 Hb_009898_060 Hb_009898_060 Hb_001899_040--Hb_009898_060 Hb_001899_040--Hb_000300_240 Hb_038190_030 Hb_038190_030 Hb_001899_040--Hb_038190_030 Hb_000002_280 Hb_000002_280 Hb_001899_040--Hb_000002_280 Hb_002221_020 Hb_002221_020 Hb_002571_050--Hb_002221_020 Hb_002571_050--Hb_000002_280 Hb_005081_090 Hb_005081_090 Hb_002571_050--Hb_005081_090 Hb_000915_220 Hb_000915_220 Hb_002571_050--Hb_000915_220 Hb_002571_050--Hb_000300_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.137899 0.00695929 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0167717 0 0.0133387 0.106491

CAGE analysis