Hb_002006_120

Information

Type -
Description -
Location Contig2006: 101612-106211
Sequence    

Annotation

kegg
ID vvi:100257704
description glycine--tRNA ligase 1, mitochondrial
nr
ID XP_012090575.1
description PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Jatropha curcas]
swissprot
ID O23627
description Glycine--tRNA ligase 1, mitochondrial OS=Arabidopsis thaliana GN=GLYRS-1 PE=2 SV=1
trembl
ID E6NU13
description JHL07K02.13 protein OS=Jatropha curcas GN=JHL07K02.13 PE=3 SV=1
Gene Ontology
ID GO:0004820
description glycine--trna ligase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20340: 101541-102235
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002006_120 0.0 - - PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Jatropha curcas]
2 Hb_003905_040 0.1956782898 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
3 Hb_007254_050 0.1983146683 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
4 Hb_033312_090 0.1984124349 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
5 Hb_149484_010 0.1986222494 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor-like [Eucalyptus grandis]
6 Hb_061350_010 0.2000369665 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
7 Hb_004030_070 0.2026370232 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
8 Hb_001754_200 0.2031277162 - - PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
9 Hb_000347_380 0.2033293951 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
10 Hb_065525_010 0.2037553256 - - hypothetical protein JCGZ_01481 [Jatropha curcas]
11 Hb_015882_020 0.210940875 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
12 Hb_004108_120 0.2156397802 - - PREDICTED: EID1-like F-box protein 3 [Jatropha curcas]
13 Hb_008103_100 0.2158272896 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
14 Hb_001771_060 0.2200912486 - - hypothetical protein B456_012G144100 [Gossypium raimondii]
15 Hb_002076_030 0.2204968861 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
16 Hb_028285_020 0.2288686822 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
17 Hb_002375_080 0.2294754518 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000705_130 0.2306113235 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001318_140 0.2306338953 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
20 Hb_003914_050 0.2309050349 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]

Gene co-expression network

sample Hb_002006_120 Hb_002006_120 Hb_003905_040 Hb_003905_040 Hb_002006_120--Hb_003905_040 Hb_007254_050 Hb_007254_050 Hb_002006_120--Hb_007254_050 Hb_033312_090 Hb_033312_090 Hb_002006_120--Hb_033312_090 Hb_149484_010 Hb_149484_010 Hb_002006_120--Hb_149484_010 Hb_061350_010 Hb_061350_010 Hb_002006_120--Hb_061350_010 Hb_004030_070 Hb_004030_070 Hb_002006_120--Hb_004030_070 Hb_003905_040--Hb_149484_010 Hb_001357_060 Hb_001357_060 Hb_003905_040--Hb_001357_060 Hb_002783_140 Hb_002783_140 Hb_003905_040--Hb_002783_140 Hb_007193_030 Hb_007193_030 Hb_003905_040--Hb_007193_030 Hb_000402_030 Hb_000402_030 Hb_003905_040--Hb_000402_030 Hb_001369_020 Hb_001369_020 Hb_003905_040--Hb_001369_020 Hb_004393_030 Hb_004393_030 Hb_007254_050--Hb_004393_030 Hb_007254_050--Hb_003905_040 Hb_000054_140 Hb_000054_140 Hb_007254_050--Hb_000054_140 Hb_004837_110 Hb_004837_110 Hb_007254_050--Hb_004837_110 Hb_000985_140 Hb_000985_140 Hb_007254_050--Hb_000985_140 Hb_004116_150 Hb_004116_150 Hb_007254_050--Hb_004116_150 Hb_000522_130 Hb_000522_130 Hb_033312_090--Hb_000522_130 Hb_015882_020 Hb_015882_020 Hb_033312_090--Hb_015882_020 Hb_005569_030 Hb_005569_030 Hb_033312_090--Hb_005569_030 Hb_000705_130 Hb_000705_130 Hb_033312_090--Hb_000705_130 Hb_001538_050 Hb_001538_050 Hb_033312_090--Hb_001538_050 Hb_008040_060 Hb_008040_060 Hb_033312_090--Hb_008040_060 Hb_006052_060 Hb_006052_060 Hb_149484_010--Hb_006052_060 Hb_003430_070 Hb_003430_070 Hb_149484_010--Hb_003430_070 Hb_005000_050 Hb_005000_050 Hb_149484_010--Hb_005000_050 Hb_149484_010--Hb_000402_030 Hb_005375_070 Hb_005375_070 Hb_149484_010--Hb_005375_070 Hb_027556_040 Hb_027556_040 Hb_061350_010--Hb_027556_040 Hb_001754_200 Hb_001754_200 Hb_061350_010--Hb_001754_200 Hb_004767_060 Hb_004767_060 Hb_061350_010--Hb_004767_060 Hb_002329_030 Hb_002329_030 Hb_061350_010--Hb_002329_030 Hb_003142_090 Hb_003142_090 Hb_061350_010--Hb_003142_090 Hb_000819_010 Hb_000819_010 Hb_061350_010--Hb_000819_010 Hb_008253_040 Hb_008253_040 Hb_004030_070--Hb_008253_040 Hb_004030_070--Hb_015882_020 Hb_000333_120 Hb_000333_120 Hb_004030_070--Hb_000333_120 Hb_001345_030 Hb_001345_030 Hb_004030_070--Hb_001345_030 Hb_004166_010 Hb_004166_010 Hb_004030_070--Hb_004166_010 Hb_001504_270 Hb_001504_270 Hb_004030_070--Hb_001504_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.454419 0.148688 0.117318 0.0480803 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0528911 0 0.0631233 0.149066

CAGE analysis