Hb_027556_040

Information

Type -
Description -
Location Contig27556: 21441-24183
Sequence    

Annotation

kegg
ID vvi:100241161
description pleiotropic drug resistance protein 1-like
nr
ID XP_010654715.1
description PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera]
swissprot
ID Q76CU2
description Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1
trembl
ID F6HX68
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g05590 PE=4 SV=1
Gene Ontology
ID GO:0016020
description pleiotropic drug resistance protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027556_040 0.0 - - PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera]
2 Hb_061350_010 0.1304060881 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
3 Hb_002218_070 0.1435083871 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
4 Hb_006316_030 0.1583120442 - - aldehyde oxidase, putative [Ricinus communis]
5 Hb_117840_010 0.162223396 - - Disease resistance protein RPS5, putative [Ricinus communis]
6 Hb_038777_010 0.1662121613 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
7 Hb_003497_020 0.1686199063 transcription factor TF Family: MYB MYB transcriptional factor [Populus nigra]
8 Hb_008226_120 0.1687392343 - - ATP binding protein, putative [Ricinus communis]
9 Hb_000236_110 0.1716645863 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
10 Hb_009581_040 0.1742512172 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
11 Hb_002329_030 0.1761714228 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
12 Hb_001862_060 0.1782615203 - - PREDICTED: uncharacterized protein LOC105639802 isoform X1 [Jatropha curcas]
13 Hb_002928_180 0.1798015228 - - catalase CAT1 [Manihot esculenta]
14 Hb_002600_010 0.1800805381 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
15 Hb_002276_100 0.1806618981 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
16 Hb_008175_030 0.1821098094 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
17 Hb_052764_080 0.1827783235 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
18 Hb_074312_020 0.1857677147 - - cytochrome P450, putative [Ricinus communis]
19 Hb_001894_040 0.1862684623 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
20 Hb_046101_010 0.1867949217 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]

Gene co-expression network

sample Hb_027556_040 Hb_027556_040 Hb_061350_010 Hb_061350_010 Hb_027556_040--Hb_061350_010 Hb_002218_070 Hb_002218_070 Hb_027556_040--Hb_002218_070 Hb_006316_030 Hb_006316_030 Hb_027556_040--Hb_006316_030 Hb_117840_010 Hb_117840_010 Hb_027556_040--Hb_117840_010 Hb_038777_010 Hb_038777_010 Hb_027556_040--Hb_038777_010 Hb_003497_020 Hb_003497_020 Hb_027556_040--Hb_003497_020 Hb_001754_200 Hb_001754_200 Hb_061350_010--Hb_001754_200 Hb_004767_060 Hb_004767_060 Hb_061350_010--Hb_004767_060 Hb_002329_030 Hb_002329_030 Hb_061350_010--Hb_002329_030 Hb_003142_090 Hb_003142_090 Hb_061350_010--Hb_003142_090 Hb_000819_010 Hb_000819_010 Hb_061350_010--Hb_000819_010 Hb_001410_010 Hb_001410_010 Hb_002218_070--Hb_001410_010 Hb_002218_070--Hb_117840_010 Hb_000236_110 Hb_000236_110 Hb_002218_070--Hb_000236_110 Hb_003106_210 Hb_003106_210 Hb_002218_070--Hb_003106_210 Hb_002600_010 Hb_002600_010 Hb_002218_070--Hb_002600_010 Hb_008175_030 Hb_008175_030 Hb_002218_070--Hb_008175_030 Hb_006316_030--Hb_038777_010 Hb_006316_030--Hb_003106_210 Hb_001862_060 Hb_001862_060 Hb_006316_030--Hb_001862_060 Hb_001894_040 Hb_001894_040 Hb_006316_030--Hb_001894_040 Hb_001636_010 Hb_001636_010 Hb_006316_030--Hb_001636_010 Hb_001085_230 Hb_001085_230 Hb_006316_030--Hb_001085_230 Hb_010261_030 Hb_010261_030 Hb_117840_010--Hb_010261_030 Hb_117840_010--Hb_002600_010 Hb_062479_010 Hb_062479_010 Hb_117840_010--Hb_062479_010 Hb_062229_010 Hb_062229_010 Hb_117840_010--Hb_062229_010 Hb_001879_050 Hb_001879_050 Hb_117840_010--Hb_001879_050 Hb_020285_010 Hb_020285_010 Hb_038777_010--Hb_020285_010 Hb_005357_020 Hb_005357_020 Hb_038777_010--Hb_005357_020 Hb_000497_100 Hb_000497_100 Hb_038777_010--Hb_000497_100 Hb_038777_010--Hb_001862_060 Hb_007894_030 Hb_007894_030 Hb_038777_010--Hb_007894_030 Hb_000028_460 Hb_000028_460 Hb_038777_010--Hb_000028_460 Hb_006002_010 Hb_006002_010 Hb_003497_020--Hb_006002_010 Hb_008226_120 Hb_008226_120 Hb_003497_020--Hb_008226_120 Hb_004544_090 Hb_004544_090 Hb_003497_020--Hb_004544_090 Hb_003497_020--Hb_001894_040 Hb_000037_010 Hb_000037_010 Hb_003497_020--Hb_000037_010 Hb_000417_280 Hb_000417_280 Hb_003497_020--Hb_000417_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.339383 0.0509138 0.139802 0.0250835 0.0133719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.023998 0 0.220257 0.100495

CAGE analysis