Hb_005474_050

Information

Type -
Description -
Location Contig5474: 78235-81276
Sequence    

Annotation

kegg
ID pop:POPTR_0002s12280g
description putative leucine-rich repeat transmembrane protein kinase
nr
ID XP_002302421.2
description putative leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID B9GNR7
description Putative leucine-rich repeat transmembrane protein kinase OS=Populus trichocarpa GN=POPTR_0002s12280g PE=4 SV=2
Gene Ontology
ID GO:0016740
description leucine-rich repeat transmembrane protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005474_050 0.0 - - putative leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
2 Hb_183193_010 0.1922159962 - - gibberellin 20-oxidase, putative [Ricinus communis]
3 Hb_006717_020 0.2079072094 - - calcium-dependent protein kinase [Hevea brasiliensis]
4 Hb_095449_010 0.2245879741 - - PREDICTED: low-temperature-induced 65 kDa protein-like [Jatropha curcas]
5 Hb_008078_020 0.2529425432 - - hypothetical protein JCGZ_01297 [Jatropha curcas]
6 Hb_003867_030 0.2575174733 - - -
7 Hb_002218_060 0.2580421574 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002890_350 0.2586093974 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
9 Hb_000392_510 0.2704778152 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]
10 Hb_004108_200 0.276026248 - - PREDICTED: adenylate isopentenyltransferase 3, chloroplastic [Jatropha curcas]
11 Hb_000892_040 0.2762490445 - - -
12 Hb_080873_010 0.2764863854 - - -
13 Hb_000286_180 0.2796446562 - - PREDICTED: dnaJ homolog subfamily B member 4 [Jatropha curcas]
14 Hb_171693_010 0.280108498 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
15 Hb_001031_020 0.2819070791 - - hypothetical protein VITISV_000631 [Vitis vinifera]
16 Hb_005048_080 0.2826311474 - - PREDICTED: PAP-specific phosphatase HAL2-like [Jatropha curcas]
17 Hb_000117_110 0.2827454009 - - transferase, putative [Ricinus communis]
18 Hb_030873_010 0.2866549552 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 isoform X2 [Cucumis sativus]
19 Hb_009252_140 0.2871010641 - - Spotted leaf protein, putative [Ricinus communis]
20 Hb_000522_020 0.2879297285 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]

Gene co-expression network

sample Hb_005474_050 Hb_005474_050 Hb_183193_010 Hb_183193_010 Hb_005474_050--Hb_183193_010 Hb_006717_020 Hb_006717_020 Hb_005474_050--Hb_006717_020 Hb_095449_010 Hb_095449_010 Hb_005474_050--Hb_095449_010 Hb_008078_020 Hb_008078_020 Hb_005474_050--Hb_008078_020 Hb_003867_030 Hb_003867_030 Hb_005474_050--Hb_003867_030 Hb_002218_060 Hb_002218_060 Hb_005474_050--Hb_002218_060 Hb_009252_140 Hb_009252_140 Hb_183193_010--Hb_009252_140 Hb_001814_100 Hb_001814_100 Hb_183193_010--Hb_001814_100 Hb_161045_010 Hb_161045_010 Hb_183193_010--Hb_161045_010 Hb_006501_140 Hb_006501_140 Hb_183193_010--Hb_006501_140 Hb_004162_030 Hb_004162_030 Hb_183193_010--Hb_004162_030 Hb_000892_040 Hb_000892_040 Hb_006717_020--Hb_000892_040 Hb_004108_200 Hb_004108_200 Hb_006717_020--Hb_004108_200 Hb_006717_020--Hb_002218_060 Hb_001031_020 Hb_001031_020 Hb_006717_020--Hb_001031_020 Hb_001821_070 Hb_001821_070 Hb_006717_020--Hb_001821_070 Hb_080873_010 Hb_080873_010 Hb_006717_020--Hb_080873_010 Hb_002498_150 Hb_002498_150 Hb_095449_010--Hb_002498_150 Hb_002092_140 Hb_002092_140 Hb_095449_010--Hb_002092_140 Hb_166828_010 Hb_166828_010 Hb_095449_010--Hb_166828_010 Hb_000320_170 Hb_000320_170 Hb_095449_010--Hb_000320_170 Hb_095449_010--Hb_080873_010 Hb_000297_100 Hb_000297_100 Hb_008078_020--Hb_000297_100 Hb_005545_080 Hb_005545_080 Hb_008078_020--Hb_005545_080 Hb_000307_110 Hb_000307_110 Hb_008078_020--Hb_000307_110 Hb_125884_010 Hb_125884_010 Hb_008078_020--Hb_125884_010 Hb_000649_160 Hb_000649_160 Hb_008078_020--Hb_000649_160 Hb_005656_200 Hb_005656_200 Hb_008078_020--Hb_005656_200 Hb_003867_030--Hb_002218_060 Hb_002890_350 Hb_002890_350 Hb_003867_030--Hb_002890_350 Hb_091913_010 Hb_091913_010 Hb_003867_030--Hb_091913_010 Hb_006873_030 Hb_006873_030 Hb_003867_030--Hb_006873_030 Hb_003867_030--Hb_006717_020 Hb_010091_040 Hb_010091_040 Hb_003867_030--Hb_010091_040 Hb_000029_180 Hb_000029_180 Hb_002218_060--Hb_000029_180 Hb_000117_110 Hb_000117_110 Hb_002218_060--Hb_000117_110 Hb_001677_130 Hb_001677_130 Hb_002218_060--Hb_001677_130 Hb_000398_200 Hb_000398_200 Hb_002218_060--Hb_000398_200 Hb_030370_070 Hb_030370_070 Hb_002218_060--Hb_030370_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.103175 0 0.00960688 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0118944 0 0 0.0253596

CAGE analysis