Hb_001814_100

Information

Type -
Description -
Location Contig1814: 67593-67985
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05610g
description POPTRDRAFT_823303; hypothetical protein
nr
ID XP_011015469.1
description PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9I2P8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05610g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001814_100 0.0 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
2 Hb_161045_010 0.0746902146 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
3 Hb_000260_130 0.118094501 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
4 Hb_002422_030 0.1348066008 - - E3 ubiquitin-protein ligase UPL5 -like protein [Gossypium arboreum]
5 Hb_002267_030 0.1371189942 - - hypothetical protein JCGZ_24883 [Jatropha curcas]
6 Hb_004162_030 0.1510973872 - - PREDICTED: lysosomal Pro-X carboxypeptidase-like [Jatropha curcas]
7 Hb_005714_140 0.1545076311 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
8 Hb_073973_180 0.1605751636 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
9 Hb_009252_140 0.1632777576 - - Spotted leaf protein, putative [Ricinus communis]
10 Hb_002820_090 0.1633449688 - - PREDICTED: WAT1-related protein At1g21890-like [Jatropha curcas]
11 Hb_001511_270 0.1797497871 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
12 Hb_004242_160 0.1805806955 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
13 Hb_000413_260 0.1847451228 - - kinase, putative [Ricinus communis]
14 Hb_001098_020 0.1871878868 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
15 Hb_008550_030 0.1881715895 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]
16 Hb_105814_020 0.189317455 - - berberine bridge enzyme [Hevea brasiliensis]
17 Hb_003376_150 0.192320616 - - PREDICTED: peroxidase 21 [Jatropha curcas]
18 Hb_003145_030 0.1939518019 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000840_230 0.194333044 - - RING-H2 finger protein ATL1L, putative [Ricinus communis]
20 Hb_000060_100 0.1944181775 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001814_100 Hb_001814_100 Hb_161045_010 Hb_161045_010 Hb_001814_100--Hb_161045_010 Hb_000260_130 Hb_000260_130 Hb_001814_100--Hb_000260_130 Hb_002422_030 Hb_002422_030 Hb_001814_100--Hb_002422_030 Hb_002267_030 Hb_002267_030 Hb_001814_100--Hb_002267_030 Hb_004162_030 Hb_004162_030 Hb_001814_100--Hb_004162_030 Hb_005714_140 Hb_005714_140 Hb_001814_100--Hb_005714_140 Hb_161045_010--Hb_000260_130 Hb_073973_180 Hb_073973_180 Hb_161045_010--Hb_073973_180 Hb_004242_160 Hb_004242_160 Hb_161045_010--Hb_004242_160 Hb_161045_010--Hb_002422_030 Hb_001098_020 Hb_001098_020 Hb_161045_010--Hb_001098_020 Hb_000260_130--Hb_005714_140 Hb_000260_130--Hb_002267_030 Hb_000260_130--Hb_004242_160 Hb_007305_040 Hb_007305_040 Hb_000260_130--Hb_007305_040 Hb_001511_270 Hb_001511_270 Hb_000260_130--Hb_001511_270 Hb_000840_230 Hb_000840_230 Hb_002422_030--Hb_000840_230 Hb_002422_030--Hb_004162_030 Hb_002820_090 Hb_002820_090 Hb_002422_030--Hb_002820_090 Hb_083862_010 Hb_083862_010 Hb_002422_030--Hb_083862_010 Hb_002267_030--Hb_005714_140 Hb_123078_010 Hb_123078_010 Hb_002267_030--Hb_123078_010 Hb_008550_030 Hb_008550_030 Hb_002267_030--Hb_008550_030 Hb_105814_020 Hb_105814_020 Hb_002267_030--Hb_105814_020 Hb_002267_030--Hb_002820_090 Hb_004108_200 Hb_004108_200 Hb_004162_030--Hb_004108_200 Hb_004162_030--Hb_083862_010 Hb_001031_020 Hb_001031_020 Hb_004162_030--Hb_001031_020 Hb_004162_030--Hb_161045_010 Hb_011805_060 Hb_011805_060 Hb_004162_030--Hb_011805_060 Hb_000252_190 Hb_000252_190 Hb_005714_140--Hb_000252_190 Hb_005714_140--Hb_002820_090 Hb_005714_140--Hb_004242_160 Hb_000060_100 Hb_000060_100 Hb_005714_140--Hb_000060_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.95343 0.0684641 0.586927 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.282946

CAGE analysis