Hb_183193_010

Information

Type -
Description -
Location Contig183193: 9421-11876
Sequence    

Annotation

kegg
ID rcu:RCOM_0773540
description gibberellin 20-oxidase, putative (EC:1.14.11.15)
nr
ID XP_002527163.1
description gibberellin 20-oxidase, putative [Ricinus communis]
swissprot
ID Q39110
description Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=GA20OX1 PE=2 SV=2
trembl
ID B9SME4
description Gibberellin 20-oxidase, putative OS=Ricinus communis GN=RCOM_0773540 PE=3 SV=1
Gene Ontology
ID GO:0005506
description gibberellin 20-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183193_010 0.0 - - gibberellin 20-oxidase, putative [Ricinus communis]
2 Hb_009252_140 0.1850668419 - - Spotted leaf protein, putative [Ricinus communis]
3 Hb_005474_050 0.1922159962 - - putative leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
4 Hb_001814_100 0.1954283502 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
5 Hb_161045_010 0.2303975323 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
6 Hb_006501_140 0.2329066787 - - PREDICTED: MATE efflux family protein 9-like [Jatropha curcas]
7 Hb_004162_030 0.2395095225 - - PREDICTED: lysosomal Pro-X carboxypeptidase-like [Jatropha curcas]
8 Hb_034953_010 0.242944252 - - hypothetical protein JCGZ_00031 [Jatropha curcas]
9 Hb_002422_030 0.2435693836 - - E3 ubiquitin-protein ligase UPL5 -like protein [Gossypium arboreum]
10 Hb_002267_030 0.2463241894 - - hypothetical protein JCGZ_24883 [Jatropha curcas]
11 Hb_002820_090 0.2480559935 - - PREDICTED: WAT1-related protein At1g21890-like [Jatropha curcas]
12 Hb_000260_130 0.2496182501 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
13 Hb_005054_250 0.251700179 - - PREDICTED: uncharacterized acetyltransferase At3g50280 [Jatropha curcas]
14 Hb_004968_050 0.2533001834 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
15 Hb_004108_200 0.2533939467 - - PREDICTED: adenylate isopentenyltransferase 3, chloroplastic [Jatropha curcas]
16 Hb_166155_010 0.2585250525 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
17 Hb_008078_020 0.2603352581 - - hypothetical protein JCGZ_01297 [Jatropha curcas]
18 Hb_004607_180 0.2616201971 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005694_030 0.2634605644 - - PREDICTED: E3 ubiquitin-protein ligase PUB22-like [Jatropha curcas]
20 Hb_006717_020 0.2638565426 - - calcium-dependent protein kinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_183193_010 Hb_183193_010 Hb_009252_140 Hb_009252_140 Hb_183193_010--Hb_009252_140 Hb_005474_050 Hb_005474_050 Hb_183193_010--Hb_005474_050 Hb_001814_100 Hb_001814_100 Hb_183193_010--Hb_001814_100 Hb_161045_010 Hb_161045_010 Hb_183193_010--Hb_161045_010 Hb_006501_140 Hb_006501_140 Hb_183193_010--Hb_006501_140 Hb_004162_030 Hb_004162_030 Hb_183193_010--Hb_004162_030 Hb_009252_140--Hb_004162_030 Hb_000840_230 Hb_000840_230 Hb_009252_140--Hb_000840_230 Hb_011805_060 Hb_011805_060 Hb_009252_140--Hb_011805_060 Hb_009252_140--Hb_161045_010 Hb_009252_140--Hb_001814_100 Hb_002639_090 Hb_002639_090 Hb_009252_140--Hb_002639_090 Hb_006717_020 Hb_006717_020 Hb_005474_050--Hb_006717_020 Hb_095449_010 Hb_095449_010 Hb_005474_050--Hb_095449_010 Hb_008078_020 Hb_008078_020 Hb_005474_050--Hb_008078_020 Hb_003867_030 Hb_003867_030 Hb_005474_050--Hb_003867_030 Hb_002218_060 Hb_002218_060 Hb_005474_050--Hb_002218_060 Hb_001814_100--Hb_161045_010 Hb_000260_130 Hb_000260_130 Hb_001814_100--Hb_000260_130 Hb_002422_030 Hb_002422_030 Hb_001814_100--Hb_002422_030 Hb_002267_030 Hb_002267_030 Hb_001814_100--Hb_002267_030 Hb_001814_100--Hb_004162_030 Hb_005714_140 Hb_005714_140 Hb_001814_100--Hb_005714_140 Hb_161045_010--Hb_000260_130 Hb_073973_180 Hb_073973_180 Hb_161045_010--Hb_073973_180 Hb_004242_160 Hb_004242_160 Hb_161045_010--Hb_004242_160 Hb_161045_010--Hb_002422_030 Hb_001098_020 Hb_001098_020 Hb_161045_010--Hb_001098_020 Hb_000805_220 Hb_000805_220 Hb_006501_140--Hb_000805_220 Hb_100526_020 Hb_100526_020 Hb_006501_140--Hb_100526_020 Hb_000930_020 Hb_000930_020 Hb_006501_140--Hb_000930_020 Hb_105814_020 Hb_105814_020 Hb_006501_140--Hb_105814_020 Hb_003145_030 Hb_003145_030 Hb_006501_140--Hb_003145_030 Hb_000974_030 Hb_000974_030 Hb_006501_140--Hb_000974_030 Hb_004108_200 Hb_004108_200 Hb_004162_030--Hb_004108_200 Hb_083862_010 Hb_083862_010 Hb_004162_030--Hb_083862_010 Hb_001031_020 Hb_001031_020 Hb_004162_030--Hb_001031_020 Hb_004162_030--Hb_161045_010 Hb_004162_030--Hb_002422_030 Hb_004162_030--Hb_011805_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.442129 0 0.144533 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0358823 0 0 0.0738311

CAGE analysis