Hb_009252_140

Information

Type -
Description -
Location Contig9252: 144333-146381
Sequence    

Annotation

kegg
ID rcu:RCOM_1511320
description Spotted leaf protein, putative
nr
ID XP_002511423.1
description Spotted leaf protein, putative [Ricinus communis]
swissprot
ID O80742
description U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19 PE=2 SV=1
trembl
ID B9RB48
description Spotted leaf protein, putative OS=Ricinus communis GN=RCOM_1511320 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 19-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62633: 144208-144821 , PASA_asmbl_62635: 145742-146037
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009252_140 0.0 - - Spotted leaf protein, putative [Ricinus communis]
2 Hb_004162_030 0.1511522352 - - PREDICTED: lysosomal Pro-X carboxypeptidase-like [Jatropha curcas]
3 Hb_000840_230 0.1538668749 - - RING-H2 finger protein ATL1L, putative [Ricinus communis]
4 Hb_011805_060 0.1622555753 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
5 Hb_161045_010 0.1630589438 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
6 Hb_001814_100 0.1632777576 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
7 Hb_002639_090 0.1649678823 - - hypothetical protein JCGZ_08134 [Jatropha curcas]
8 Hb_004607_180 0.1762419025 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000260_130 0.1801271511 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
10 Hb_000142_010 0.1806335152 - - PREDICTED: uncharacterized protein LOC105632779 [Jatropha curcas]
11 Hb_077562_010 0.1812116105 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
12 Hb_183193_010 0.1850668419 - - gibberellin 20-oxidase, putative [Ricinus communis]
13 Hb_002422_030 0.1854383789 - - E3 ubiquitin-protein ligase UPL5 -like protein [Gossypium arboreum]
14 Hb_004968_050 0.1863131982 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
15 Hb_004108_200 0.187568159 - - PREDICTED: adenylate isopentenyltransferase 3, chloroplastic [Jatropha curcas]
16 Hb_001031_020 0.1881674647 - - hypothetical protein VITISV_000631 [Vitis vinifera]
17 Hb_000045_110 0.1891450836 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
18 Hb_007810_130 0.1899530563 - - PREDICTED: ankyrin-1-like [Prunus mume]
19 Hb_000072_310 0.1912513005 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 43-like [Jatropha curcas]
20 Hb_009393_010 0.1921044217 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]

Gene co-expression network

sample Hb_009252_140 Hb_009252_140 Hb_004162_030 Hb_004162_030 Hb_009252_140--Hb_004162_030 Hb_000840_230 Hb_000840_230 Hb_009252_140--Hb_000840_230 Hb_011805_060 Hb_011805_060 Hb_009252_140--Hb_011805_060 Hb_161045_010 Hb_161045_010 Hb_009252_140--Hb_161045_010 Hb_001814_100 Hb_001814_100 Hb_009252_140--Hb_001814_100 Hb_002639_090 Hb_002639_090 Hb_009252_140--Hb_002639_090 Hb_004108_200 Hb_004108_200 Hb_004162_030--Hb_004108_200 Hb_083862_010 Hb_083862_010 Hb_004162_030--Hb_083862_010 Hb_001031_020 Hb_001031_020 Hb_004162_030--Hb_001031_020 Hb_004162_030--Hb_161045_010 Hb_002422_030 Hb_002422_030 Hb_004162_030--Hb_002422_030 Hb_004162_030--Hb_011805_060 Hb_000840_230--Hb_002639_090 Hb_077562_010 Hb_077562_010 Hb_000840_230--Hb_077562_010 Hb_000072_310 Hb_000072_310 Hb_000840_230--Hb_000072_310 Hb_000318_320 Hb_000318_320 Hb_000840_230--Hb_000318_320 Hb_005588_140 Hb_005588_140 Hb_000840_230--Hb_005588_140 Hb_009393_010 Hb_009393_010 Hb_000840_230--Hb_009393_010 Hb_002475_110 Hb_002475_110 Hb_011805_060--Hb_002475_110 Hb_000610_030 Hb_000610_030 Hb_011805_060--Hb_000610_030 Hb_013726_100 Hb_013726_100 Hb_011805_060--Hb_013726_100 Hb_002311_490 Hb_002311_490 Hb_011805_060--Hb_002311_490 Hb_011671_290 Hb_011671_290 Hb_011805_060--Hb_011671_290 Hb_011805_060--Hb_002639_090 Hb_161045_010--Hb_001814_100 Hb_000260_130 Hb_000260_130 Hb_161045_010--Hb_000260_130 Hb_073973_180 Hb_073973_180 Hb_161045_010--Hb_073973_180 Hb_004242_160 Hb_004242_160 Hb_161045_010--Hb_004242_160 Hb_161045_010--Hb_002422_030 Hb_001098_020 Hb_001098_020 Hb_161045_010--Hb_001098_020 Hb_001814_100--Hb_000260_130 Hb_001814_100--Hb_002422_030 Hb_002267_030 Hb_002267_030 Hb_001814_100--Hb_002267_030 Hb_001814_100--Hb_004162_030 Hb_005714_140 Hb_005714_140 Hb_001814_100--Hb_005714_140 Hb_002639_090--Hb_000072_310 Hb_002639_090--Hb_077562_010 Hb_052530_030 Hb_052530_030 Hb_002639_090--Hb_052530_030 Hb_002639_090--Hb_009393_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.124917 102.452 0.676594 25.393 0.00968233 0.108847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.988705 1.38302 0.656082 0.440081 6.32505

CAGE analysis