Hb_004450_030

Information

Type -
Description -
Location Contig4450: 39264-39779
Sequence    

Annotation

kegg
ID rcu:RCOM_0466790
description hypothetical protein
nr
ID XP_002528053.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SPY4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0466790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004450_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010417_110 0.0999235395 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000181_390 0.1210550089 - - unknown [Lotus japonicus]
4 Hb_005618_010 0.1362851079 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
5 Hb_000258_230 0.1469187611 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000068_040 0.1496834041 - - Inter-alpha-trypsin inhibitor heavy chain H3 precursor, putative [Ricinus communis]
7 Hb_097634_010 0.1502649491 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
8 Hb_007292_050 0.1564337382 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
9 Hb_010174_200 0.1565833792 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]
10 Hb_009557_080 0.1570638381 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
11 Hb_026050_010 0.1578889151 - - protein phosphatase 2c, putative [Ricinus communis]
12 Hb_002725_080 0.1625196234 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_000375_150 0.1627115623 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000172_070 0.1654318349 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
15 Hb_003209_090 0.1668246608 - - Xyloglucan endotransglucosylase/hydrolase family protein [Theobroma cacao]
16 Hb_002170_010 0.1682130583 - - hypothetical protein JCGZ_25046 [Jatropha curcas]
17 Hb_002066_010 0.1690219444 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
18 Hb_000201_010 0.1698880773 - - unnamed protein product [Vitis vinifera]
19 Hb_002250_140 0.170167603 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
20 Hb_000892_030 0.1706007934 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]

Gene co-expression network

sample Hb_004450_030 Hb_004450_030 Hb_010417_110 Hb_010417_110 Hb_004450_030--Hb_010417_110 Hb_000181_390 Hb_000181_390 Hb_004450_030--Hb_000181_390 Hb_005618_010 Hb_005618_010 Hb_004450_030--Hb_005618_010 Hb_000258_230 Hb_000258_230 Hb_004450_030--Hb_000258_230 Hb_000068_040 Hb_000068_040 Hb_004450_030--Hb_000068_040 Hb_097634_010 Hb_097634_010 Hb_004450_030--Hb_097634_010 Hb_002725_080 Hb_002725_080 Hb_010417_110--Hb_002725_080 Hb_009557_080 Hb_009557_080 Hb_010417_110--Hb_009557_080 Hb_006002_020 Hb_006002_020 Hb_010417_110--Hb_006002_020 Hb_000375_150 Hb_000375_150 Hb_010417_110--Hb_000375_150 Hb_010417_110--Hb_005618_010 Hb_000181_390--Hb_000375_150 Hb_000181_390--Hb_005618_010 Hb_026415_010 Hb_026415_010 Hb_000181_390--Hb_026415_010 Hb_000172_070 Hb_000172_070 Hb_000181_390--Hb_000172_070 Hb_000181_390--Hb_010417_110 Hb_005618_010--Hb_000172_070 Hb_007292_050 Hb_007292_050 Hb_005618_010--Hb_007292_050 Hb_010267_030 Hb_010267_030 Hb_005618_010--Hb_010267_030 Hb_112145_010 Hb_112145_010 Hb_005618_010--Hb_112145_010 Hb_005618_010--Hb_002725_080 Hb_009771_040 Hb_009771_040 Hb_000258_230--Hb_009771_040 Hb_002250_140 Hb_002250_140 Hb_000258_230--Hb_002250_140 Hb_007103_020 Hb_007103_020 Hb_000258_230--Hb_007103_020 Hb_152277_010 Hb_152277_010 Hb_000258_230--Hb_152277_010 Hb_026050_010 Hb_026050_010 Hb_000258_230--Hb_026050_010 Hb_000201_010 Hb_000201_010 Hb_000258_230--Hb_000201_010 Hb_003090_170 Hb_003090_170 Hb_000068_040--Hb_003090_170 Hb_000068_040--Hb_000258_230 Hb_005790_010 Hb_005790_010 Hb_000068_040--Hb_005790_010 Hb_186312_010 Hb_186312_010 Hb_000068_040--Hb_186312_010 Hb_003209_090 Hb_003209_090 Hb_000068_040--Hb_003209_090 Hb_000892_030 Hb_000892_030 Hb_097634_010--Hb_000892_030 Hb_097634_010--Hb_010417_110 Hb_010174_200 Hb_010174_200 Hb_097634_010--Hb_010174_200 Hb_000567_110 Hb_000567_110 Hb_097634_010--Hb_000567_110 Hb_004109_110 Hb_004109_110 Hb_097634_010--Hb_004109_110 Hb_000638_180 Hb_000638_180 Hb_097634_010--Hb_000638_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0545506 12.8383 4.7626 13.4411 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.637543 0.500894 0 0.0415285 6.97681

CAGE analysis