Hb_002837_080

Information

Type -
Description -
Location Contig2837: 103155-104534
Sequence    

Annotation

kegg
ID rcu:RCOM_1320100
description acyltransferase, putative
nr
ID XP_002529285.1
description acyltransferase, putative [Ricinus communis]
swissprot
ID Q9C992
description 3-ketoacyl-CoA synthase 7 OS=Arabidopsis thaliana GN=KCS7 PE=2 SV=1
trembl
ID B9STG6
description 3-ketoacyl-CoA synthase OS=Ricinus communis GN=RCOM_1320100 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002837_080 0.0 - - acyltransferase, putative [Ricinus communis]
2 Hb_001817_110 0.0651327771 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
3 Hb_082972_010 0.0700429657 - - -
4 Hb_002060_070 0.0890310499 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
5 Hb_043127_010 0.1158894575 - - PREDICTED: uncharacterized protein LOC105648822 [Jatropha curcas]
6 Hb_013407_010 0.1190318433 - - hypothetical protein JCGZ_23575 [Jatropha curcas]
7 Hb_009492_020 0.1218755875 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
8 Hb_156850_050 0.1386798454 - - PREDICTED: uncharacterized protein LOC105635250 [Jatropha curcas]
9 Hb_001709_080 0.1459910136 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
10 Hb_003589_100 0.1471122696 - - hypothetical protein JCGZ_03338 [Jatropha curcas]
11 Hb_001379_080 0.1543983731 - - PREDICTED: WAT1-related protein At5g07050-like [Vitis vinifera]
12 Hb_000096_050 0.1600131029 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000930_020 0.1765734372 - - hypothetical protein PRUPE_ppa026493mg [Prunus persica]
14 Hb_000020_180 0.1791016794 - - laccase, putative [Ricinus communis]
15 Hb_000012_380 0.180710737 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
16 Hb_005827_020 0.1851942029 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
17 Hb_012691_060 0.1877753469 - - PREDICTED: isoflavone 2'-hydroxylase-like isoform X1 [Prunus mume]
18 Hb_000805_220 0.1889977398 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_026124_020 0.1906237792 - - PREDICTED: uncharacterized protein LOC105644241 isoform X1 [Jatropha curcas]
20 Hb_030949_010 0.193427586 - - hypothetical protein POPTR_0001s24140g [Populus trichocarpa]

Gene co-expression network

sample Hb_002837_080 Hb_002837_080 Hb_001817_110 Hb_001817_110 Hb_002837_080--Hb_001817_110 Hb_082972_010 Hb_082972_010 Hb_002837_080--Hb_082972_010 Hb_002060_070 Hb_002060_070 Hb_002837_080--Hb_002060_070 Hb_043127_010 Hb_043127_010 Hb_002837_080--Hb_043127_010 Hb_013407_010 Hb_013407_010 Hb_002837_080--Hb_013407_010 Hb_009492_020 Hb_009492_020 Hb_002837_080--Hb_009492_020 Hb_001817_110--Hb_082972_010 Hb_001817_110--Hb_043127_010 Hb_001817_110--Hb_002060_070 Hb_001817_110--Hb_013407_010 Hb_012691_060 Hb_012691_060 Hb_001817_110--Hb_012691_060 Hb_082972_010--Hb_002060_070 Hb_082972_010--Hb_043127_010 Hb_082972_010--Hb_012691_060 Hb_001379_080 Hb_001379_080 Hb_082972_010--Hb_001379_080 Hb_002060_070--Hb_001379_080 Hb_000096_050 Hb_000096_050 Hb_002060_070--Hb_000096_050 Hb_000930_020 Hb_000930_020 Hb_002060_070--Hb_000930_020 Hb_043127_010--Hb_013407_010 Hb_043127_010--Hb_002060_070 Hb_043127_010--Hb_012691_060 Hb_005827_020 Hb_005827_020 Hb_013407_010--Hb_005827_020 Hb_001709_080 Hb_001709_080 Hb_013407_010--Hb_001709_080 Hb_000311_100 Hb_000311_100 Hb_013407_010--Hb_000311_100 Hb_003589_100 Hb_003589_100 Hb_009492_020--Hb_003589_100 Hb_000805_220 Hb_000805_220 Hb_009492_020--Hb_000805_220 Hb_009492_020--Hb_002060_070 Hb_156850_050 Hb_156850_050 Hb_009492_020--Hb_156850_050 Hb_009492_020--Hb_000930_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0275376 0 0.0710249 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0564025

CAGE analysis