Hb_001379_080

Information

Type -
Description -
Location Contig1379: 49290-54800
Sequence    

Annotation

kegg
ID vvi:100243263
description WAT1-related protein At5g07050-like
nr
ID XP_002264165.2
description PREDICTED: WAT1-related protein At5g07050-like [Vitis vinifera]
swissprot
ID Q9FL41
description WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1
trembl
ID B9RGA6
description Auxin-induced protein 5NG4, putative OS=Ricinus communis GN=RCOM_1452490 PE=4 SV=1
Gene Ontology
ID GO:0016020
description wat1-related protein at5g07050-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001379_080 0.0 - - PREDICTED: WAT1-related protein At5g07050-like [Vitis vinifera]
2 Hb_002060_070 0.1133829841 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
3 Hb_082972_010 0.14138649 - - -
4 Hb_000805_220 0.1508124995 - - polyprotein [Citrus endogenous pararetrovirus]
5 Hb_002837_080 0.1543983731 - - acyltransferase, putative [Ricinus communis]
6 Hb_000930_020 0.1551198982 - - hypothetical protein PRUPE_ppa026493mg [Prunus persica]
7 Hb_100526_020 0.1553067373 - - hypothetical protein POPTR_0003s09340g [Populus trichocarpa]
8 Hb_000096_050 0.1559384562 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001817_110 0.1603292541 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
10 Hb_009492_020 0.1608242987 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
11 Hb_137338_010 0.1705520313 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
12 Hb_043127_010 0.1945429792 - - PREDICTED: uncharacterized protein LOC105648822 [Jatropha curcas]
13 Hb_003589_100 0.1971782375 - - hypothetical protein JCGZ_03338 [Jatropha curcas]
14 Hb_012691_060 0.1980780709 - - PREDICTED: isoflavone 2'-hydroxylase-like isoform X1 [Prunus mume]
15 Hb_156850_050 0.2029689984 - - PREDICTED: uncharacterized protein LOC105635250 [Jatropha curcas]
16 Hb_001498_050 0.2077657677 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
17 Hb_030949_010 0.2096293359 - - hypothetical protein POPTR_0001s24140g [Populus trichocarpa]
18 Hb_006501_140 0.2136784637 - - PREDICTED: MATE efflux family protein 9-like [Jatropha curcas]
19 Hb_000974_030 0.2239699515 - - PREDICTED: uncharacterized protein LOC105128463 isoform X1 [Populus euphratica]
20 Hb_000752_040 0.2244688859 - - PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_001379_080 Hb_001379_080 Hb_002060_070 Hb_002060_070 Hb_001379_080--Hb_002060_070 Hb_082972_010 Hb_082972_010 Hb_001379_080--Hb_082972_010 Hb_000805_220 Hb_000805_220 Hb_001379_080--Hb_000805_220 Hb_002837_080 Hb_002837_080 Hb_001379_080--Hb_002837_080 Hb_000930_020 Hb_000930_020 Hb_001379_080--Hb_000930_020 Hb_100526_020 Hb_100526_020 Hb_001379_080--Hb_100526_020 Hb_002060_070--Hb_082972_010 Hb_001817_110 Hb_001817_110 Hb_002060_070--Hb_001817_110 Hb_002060_070--Hb_002837_080 Hb_000096_050 Hb_000096_050 Hb_002060_070--Hb_000096_050 Hb_002060_070--Hb_000930_020 Hb_082972_010--Hb_001817_110 Hb_082972_010--Hb_002837_080 Hb_043127_010 Hb_043127_010 Hb_082972_010--Hb_043127_010 Hb_012691_060 Hb_012691_060 Hb_082972_010--Hb_012691_060 Hb_006501_140 Hb_006501_140 Hb_000805_220--Hb_006501_140 Hb_009492_020 Hb_009492_020 Hb_000805_220--Hb_009492_020 Hb_000805_220--Hb_000930_020 Hb_000805_220--Hb_002060_070 Hb_000805_220--Hb_100526_020 Hb_000805_220--Hb_000096_050 Hb_002837_080--Hb_001817_110 Hb_002837_080--Hb_043127_010 Hb_013407_010 Hb_013407_010 Hb_002837_080--Hb_013407_010 Hb_002837_080--Hb_009492_020 Hb_000930_020--Hb_000096_050 Hb_000930_020--Hb_100526_020 Hb_000930_020--Hb_009492_020 Hb_000974_030 Hb_000974_030 Hb_000930_020--Hb_000974_030 Hb_100526_020--Hb_000096_050 Hb_100526_020--Hb_000974_030 Hb_000984_110 Hb_000984_110 Hb_100526_020--Hb_000984_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.993253 0 1.29858 0 0.085768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.25895

CAGE analysis