Hb_000370_070

Information

Type -
Description -
Location Contig370: 142558-145948
Sequence    

Annotation

kegg
ID cit:102629210
description subtilisin-like protease-like
nr
ID XP_006487074.1
description PREDICTED: subtilisin-like protease-like [Citrus sinensis]
swissprot
ID I1N462
description Subtilisin-like protease Glyma18g48580 OS=Glycine max GN=Glyma18g48580 PE=1 SV=3
trembl
ID A0A0D2U931
description Gossypium raimondii unplaced genomic scaffold scaffold_257, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_N019600 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38030: 63318-144063
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000370_070 0.0 - - PREDICTED: subtilisin-like protease-like [Citrus sinensis]
2 Hb_000138_060 0.1730430847 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
3 Hb_116702_010 0.1770413592 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
4 Hb_000221_090 0.1791586838 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
5 Hb_000236_160 0.1859623939 - - PREDICTED: UDP-glucuronate 4-epimerase 6 [Jatropha curcas]
6 Hb_028207_060 0.1872085221 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
7 Hb_007793_050 0.1876237526 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000193_300 0.1917410163 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
9 Hb_000413_070 0.191980711 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002289_150 0.1963411085 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
11 Hb_001347_050 0.1980086744 - - serine/threonine protein kinase, putative [Ricinus communis]
12 Hb_001148_060 0.1992512852 - - hypothetical protein JCGZ_00278 [Jatropha curcas]
13 Hb_026740_020 0.2059581897 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
14 Hb_017434_070 0.2084747163 - - transcription factor, putative [Ricinus communis]
15 Hb_009808_010 0.2088233049 - - Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
16 Hb_000065_090 0.209136589 - - potassium channel tetramerization domain-containing protein, putative [Ricinus communis]
17 Hb_001847_050 0.2107723242 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]
18 Hb_001776_030 0.2121431322 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005192_010 0.2128436288 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
20 Hb_001191_130 0.2138361506 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000370_070 Hb_000370_070 Hb_000138_060 Hb_000138_060 Hb_000370_070--Hb_000138_060 Hb_116702_010 Hb_116702_010 Hb_000370_070--Hb_116702_010 Hb_000221_090 Hb_000221_090 Hb_000370_070--Hb_000221_090 Hb_000236_160 Hb_000236_160 Hb_000370_070--Hb_000236_160 Hb_028207_060 Hb_028207_060 Hb_000370_070--Hb_028207_060 Hb_007793_050 Hb_007793_050 Hb_000370_070--Hb_007793_050 Hb_002289_150 Hb_002289_150 Hb_000138_060--Hb_002289_150 Hb_000138_060--Hb_116702_010 Hb_011828_010 Hb_011828_010 Hb_000138_060--Hb_011828_010 Hb_001347_050 Hb_001347_050 Hb_000138_060--Hb_001347_050 Hb_002217_320 Hb_002217_320 Hb_000138_060--Hb_002217_320 Hb_005192_010 Hb_005192_010 Hb_000138_060--Hb_005192_010 Hb_000000_310 Hb_000000_310 Hb_116702_010--Hb_000000_310 Hb_026549_070 Hb_026549_070 Hb_116702_010--Hb_026549_070 Hb_116702_010--Hb_005192_010 Hb_001969_140 Hb_001969_140 Hb_116702_010--Hb_001969_140 Hb_116702_010--Hb_011828_010 Hb_000065_090 Hb_000065_090 Hb_000221_090--Hb_000065_090 Hb_004013_020 Hb_004013_020 Hb_000221_090--Hb_004013_020 Hb_000797_060 Hb_000797_060 Hb_000221_090--Hb_000797_060 Hb_000221_090--Hb_002289_150 Hb_000579_030 Hb_000579_030 Hb_000221_090--Hb_000579_030 Hb_000684_220 Hb_000684_220 Hb_000236_160--Hb_000684_220 Hb_002774_120 Hb_002774_120 Hb_000236_160--Hb_002774_120 Hb_003929_190 Hb_003929_190 Hb_000236_160--Hb_003929_190 Hb_000012_400 Hb_000012_400 Hb_000236_160--Hb_000012_400 Hb_010812_110 Hb_010812_110 Hb_000236_160--Hb_010812_110 Hb_030565_050 Hb_030565_050 Hb_000236_160--Hb_030565_050 Hb_000152_370 Hb_000152_370 Hb_028207_060--Hb_000152_370 Hb_003998_010 Hb_003998_010 Hb_028207_060--Hb_003998_010 Hb_007445_010 Hb_007445_010 Hb_028207_060--Hb_007445_010 Hb_001662_050 Hb_001662_050 Hb_028207_060--Hb_001662_050 Hb_001488_220 Hb_001488_220 Hb_028207_060--Hb_001488_220 Hb_000413_070 Hb_000413_070 Hb_028207_060--Hb_000413_070 Hb_004003_030 Hb_004003_030 Hb_007793_050--Hb_004003_030 Hb_001268_340 Hb_001268_340 Hb_007793_050--Hb_001268_340 Hb_004032_160 Hb_004032_160 Hb_007793_050--Hb_004032_160 Hb_001148_060 Hb_001148_060 Hb_007793_050--Hb_001148_060 Hb_000030_160 Hb_000030_160 Hb_007793_050--Hb_000030_160 Hb_002903_100 Hb_002903_100 Hb_007793_050--Hb_002903_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.02036 3.44944 2.12349 7.743 1.09753 0.525347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.915289 0.581252 0.748056 1.14836 4.1442

CAGE analysis