Hb_183025_010

Information

Type -
Description -
Location Contig183025: 305-1236
Sequence    

Annotation

kegg
ID pop:POPTR_0019s13210g
description zinc finger family protein
nr
ID XP_012088296.1
description PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
swissprot
ID Q6R567
description E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1
trembl
ID A0A067JX84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25796 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase rma1h1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183025_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
2 Hb_029584_110 0.1020142031 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
3 Hb_003029_010 0.1166358453 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
4 Hb_000656_260 0.1190566407 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
5 Hb_170401_010 0.1328511474 - - receptor serine/threonine kinase, putative [Ricinus communis]
6 Hb_000732_160 0.1346185488 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
7 Hb_073171_050 0.1349191815 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
8 Hb_002596_090 0.13497297 - - PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like isoform X1 [Jatropha curcas]
9 Hb_002010_080 0.1350505538 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
10 Hb_012799_040 0.1386066129 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
11 Hb_005054_320 0.1404310319 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
12 Hb_002783_140 0.1410034261 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
13 Hb_000260_480 0.1431333079 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
14 Hb_000500_230 0.1432745 - - hypothetical protein RCOM_0634810 [Ricinus communis]
15 Hb_003387_080 0.1440141481 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_002999_130 0.144728014 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
17 Hb_010904_010 0.1451387275 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
18 Hb_005016_080 0.1471458508 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
19 Hb_008202_010 0.1492992659 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_001147_030 0.1506535303 - - hypothetical protein JCGZ_14809 [Jatropha curcas]

Gene co-expression network

sample Hb_183025_010 Hb_183025_010 Hb_029584_110 Hb_029584_110 Hb_183025_010--Hb_029584_110 Hb_003029_010 Hb_003029_010 Hb_183025_010--Hb_003029_010 Hb_000656_260 Hb_000656_260 Hb_183025_010--Hb_000656_260 Hb_170401_010 Hb_170401_010 Hb_183025_010--Hb_170401_010 Hb_000732_160 Hb_000732_160 Hb_183025_010--Hb_000732_160 Hb_073171_050 Hb_073171_050 Hb_183025_010--Hb_073171_050 Hb_029584_110--Hb_000656_260 Hb_029584_110--Hb_003029_010 Hb_008202_010 Hb_008202_010 Hb_029584_110--Hb_008202_010 Hb_002596_090 Hb_002596_090 Hb_029584_110--Hb_002596_090 Hb_026016_010 Hb_026016_010 Hb_029584_110--Hb_026016_010 Hb_000152_410 Hb_000152_410 Hb_003029_010--Hb_000152_410 Hb_003029_010--Hb_002596_090 Hb_003387_080 Hb_003387_080 Hb_003029_010--Hb_003387_080 Hb_029095_010 Hb_029095_010 Hb_003029_010--Hb_029095_010 Hb_005016_080 Hb_005016_080 Hb_003029_010--Hb_005016_080 Hb_012799_040 Hb_012799_040 Hb_000656_260--Hb_012799_040 Hb_036492_020 Hb_036492_020 Hb_000656_260--Hb_036492_020 Hb_006358_030 Hb_006358_030 Hb_000656_260--Hb_006358_030 Hb_000402_180 Hb_000402_180 Hb_000656_260--Hb_000402_180 Hb_002999_130 Hb_002999_130 Hb_000656_260--Hb_002999_130 Hb_001147_030 Hb_001147_030 Hb_170401_010--Hb_001147_030 Hb_000500_230 Hb_000500_230 Hb_170401_010--Hb_000500_230 Hb_000010_370 Hb_000010_370 Hb_170401_010--Hb_000010_370 Hb_000260_480 Hb_000260_480 Hb_170401_010--Hb_000260_480 Hb_000140_220 Hb_000140_220 Hb_170401_010--Hb_000140_220 Hb_000049_290 Hb_000049_290 Hb_170401_010--Hb_000049_290 Hb_010614_010 Hb_010614_010 Hb_000732_160--Hb_010614_010 Hb_031685_010 Hb_031685_010 Hb_000732_160--Hb_031685_010 Hb_094439_010 Hb_094439_010 Hb_000732_160--Hb_094439_010 Hb_010904_010 Hb_010904_010 Hb_000732_160--Hb_010904_010 Hb_001631_110 Hb_001631_110 Hb_000732_160--Hb_001631_110 Hb_004241_170 Hb_004241_170 Hb_000732_160--Hb_004241_170 Hb_001369_020 Hb_001369_020 Hb_073171_050--Hb_001369_020 Hb_073171_050--Hb_002999_130 Hb_007193_030 Hb_007193_030 Hb_073171_050--Hb_007193_030 Hb_028285_020 Hb_028285_020 Hb_073171_050--Hb_028285_020 Hb_001623_410 Hb_001623_410 Hb_073171_050--Hb_001623_410 Hb_073171_050--Hb_012799_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.825694 18.4435 16.9389 6.03527 0 0.219968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0499991 0.0908066 3.33419 12.6007

CAGE analysis