Hb_011457_080

Information

Type -
Description -
Location Contig11457: 40437-44289
Sequence    

Annotation

kegg
ID rcu:RCOM_0646260
description protein kinase atmrk1, putative (EC:2.7.10.2)
nr
ID XP_012092189.1
description PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID B9SFH0
description Protein kinase atmrk1, putative OS=Ricinus communis GN=RCOM_0646260 PE=4 SV=1
Gene Ontology
ID GO:0004715
description serine threonine-protein kinase ht1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04401: 43991-44175
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011457_080 0.0 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
2 Hb_003106_240 0.1102046226 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
3 Hb_000156_080 0.1219687034 - - Potassium channel KAT2, putative [Ricinus communis]
4 Hb_010180_050 0.1339406759 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
5 Hb_027402_100 0.1450341907 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
6 Hb_028285_020 0.1464429576 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
7 Hb_004218_080 0.1479959982 - - PREDICTED: uncharacterized protein LOC105631207 [Jatropha curcas]
8 Hb_007193_030 0.1495895913 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
9 Hb_005054_320 0.1505778658 - - PREDICTED: uncharacterized protein LOC105646518 [Jatropha curcas]
10 Hb_001369_020 0.1509415191 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
11 Hb_004108_120 0.1556367992 - - PREDICTED: EID1-like F-box protein 3 [Jatropha curcas]
12 Hb_002999_130 0.1583466729 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
13 Hb_019026_040 0.158677951 - - S-locus lectin protein kinase family protein [Theobroma cacao]
14 Hb_004907_070 0.1606057517 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
15 Hb_004007_210 0.1613732388 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
16 Hb_003579_010 0.1636953484 - - cryptochrome 1.2 [Populus tremula]
17 Hb_012814_030 0.1639346634 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
18 Hb_002030_100 0.1657766517 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
19 Hb_000230_250 0.1668449621 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
20 Hb_000656_260 0.1673049177 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]

Gene co-expression network

sample Hb_011457_080 Hb_011457_080 Hb_003106_240 Hb_003106_240 Hb_011457_080--Hb_003106_240 Hb_000156_080 Hb_000156_080 Hb_011457_080--Hb_000156_080 Hb_010180_050 Hb_010180_050 Hb_011457_080--Hb_010180_050 Hb_027402_100 Hb_027402_100 Hb_011457_080--Hb_027402_100 Hb_028285_020 Hb_028285_020 Hb_011457_080--Hb_028285_020 Hb_004218_080 Hb_004218_080 Hb_011457_080--Hb_004218_080 Hb_003106_240--Hb_004218_080 Hb_003106_240--Hb_010180_050 Hb_003106_240--Hb_027402_100 Hb_000035_060 Hb_000035_060 Hb_003106_240--Hb_000035_060 Hb_007193_030 Hb_007193_030 Hb_003106_240--Hb_007193_030 Hb_004109_150 Hb_004109_150 Hb_000156_080--Hb_004109_150 Hb_000156_080--Hb_004218_080 Hb_000402_180 Hb_000402_180 Hb_000156_080--Hb_000402_180 Hb_002030_100 Hb_002030_100 Hb_000156_080--Hb_002030_100 Hb_000156_080--Hb_007193_030 Hb_000072_240 Hb_000072_240 Hb_010180_050--Hb_000072_240 Hb_000594_150 Hb_000594_150 Hb_010180_050--Hb_000594_150 Hb_002999_130 Hb_002999_130 Hb_010180_050--Hb_002999_130 Hb_005054_320 Hb_005054_320 Hb_010180_050--Hb_005054_320 Hb_000230_250 Hb_000230_250 Hb_010180_050--Hb_000230_250 Hb_132840_090 Hb_132840_090 Hb_027402_100--Hb_132840_090 Hb_027402_100--Hb_004218_080 Hb_000753_140 Hb_000753_140 Hb_027402_100--Hb_000753_140 Hb_000318_410 Hb_000318_410 Hb_027402_100--Hb_000318_410 Hb_004108_120 Hb_004108_120 Hb_028285_020--Hb_004108_120 Hb_073171_050 Hb_073171_050 Hb_028285_020--Hb_073171_050 Hb_001369_020 Hb_001369_020 Hb_028285_020--Hb_001369_020 Hb_028285_020--Hb_007193_030 Hb_028285_020--Hb_002999_130 Hb_002783_140 Hb_002783_140 Hb_028285_020--Hb_002783_140 Hb_004218_080--Hb_007193_030 Hb_005725_280 Hb_005725_280 Hb_004218_080--Hb_005725_280 Hb_002498_250 Hb_002498_250 Hb_004218_080--Hb_002498_250 Hb_000365_340 Hb_000365_340 Hb_004218_080--Hb_000365_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.84222 39.9719 20.277 9.35791 0.17498 0.581908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.595265 0.602205 1.65184 1.13746 24.6784

CAGE analysis