Hb_004195_190

Information

Type -
Description -
Location Contig4195: 168136-170693
Sequence    

Annotation

kegg
ID rcu:RCOM_0534040
description WD-repeat protein, putative (EC:2.3.1.48)
nr
ID XP_002521518.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q9P775
description Uncharacterized WD repeat-containing protein C17D11.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1711.16 PE=1 SV=1
trembl
ID B9S699
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0534040 PE=4 SV=1
Gene Ontology
ID GO:0004402
description uncharacterized wd repeat-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004195_190 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_002555_020 0.1191726496 - - Receptor-like protein kinase [Medicago truncatula]
3 Hb_001454_160 0.1419167607 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
4 Hb_000521_300 0.1484438906 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
5 Hb_001489_030 0.1533632001 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
6 Hb_004619_010 0.1557367724 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
7 Hb_000679_240 0.1648223585 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
8 Hb_067034_030 0.172382301 - - ATP-binding cassette transporter, putative [Ricinus communis]
9 Hb_017987_040 0.1740108991 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
10 Hb_006198_150 0.1767384592 - - -
11 Hb_018563_040 0.1794188609 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_001761_040 0.1823404258 - - PREDICTED: beta-amyrin synthase-like [Jatropha curcas]
13 Hb_011214_140 0.1838686147 - - Ran GTPase binding protein, putative [Ricinus communis]
14 Hb_007666_040 0.1867791731 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]
15 Hb_000976_060 0.1883950364 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
16 Hb_005489_160 0.1888666129 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
17 Hb_011909_030 0.1903203144 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
18 Hb_151364_010 0.1915752292 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
19 Hb_001951_030 0.1947941569 - - hypothetical protein JCGZ_04584 [Jatropha curcas]
20 Hb_005000_220 0.1952734681 - - gulonolactone oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004195_190 Hb_004195_190 Hb_002555_020 Hb_002555_020 Hb_004195_190--Hb_002555_020 Hb_001454_160 Hb_001454_160 Hb_004195_190--Hb_001454_160 Hb_000521_300 Hb_000521_300 Hb_004195_190--Hb_000521_300 Hb_001489_030 Hb_001489_030 Hb_004195_190--Hb_001489_030 Hb_004619_010 Hb_004619_010 Hb_004195_190--Hb_004619_010 Hb_000679_240 Hb_000679_240 Hb_004195_190--Hb_000679_240 Hb_002555_020--Hb_001454_160 Hb_018563_040 Hb_018563_040 Hb_002555_020--Hb_018563_040 Hb_000976_060 Hb_000976_060 Hb_002555_020--Hb_000976_060 Hb_002555_020--Hb_001489_030 Hb_005542_110 Hb_005542_110 Hb_002555_020--Hb_005542_110 Hb_001454_160--Hb_018563_040 Hb_001454_160--Hb_000976_060 Hb_001454_160--Hb_005542_110 Hb_152718_010 Hb_152718_010 Hb_001454_160--Hb_152718_010 Hb_001454_160--Hb_001489_030 Hb_001252_040 Hb_001252_040 Hb_000521_300--Hb_001252_040 Hb_000086_370 Hb_000086_370 Hb_000521_300--Hb_000086_370 Hb_000088_160 Hb_000088_160 Hb_000521_300--Hb_000088_160 Hb_001373_010 Hb_001373_010 Hb_000521_300--Hb_001373_010 Hb_011214_140 Hb_011214_140 Hb_000521_300--Hb_011214_140 Hb_000043_080 Hb_000043_080 Hb_001489_030--Hb_000043_080 Hb_008503_020 Hb_008503_020 Hb_001489_030--Hb_008503_020 Hb_000300_570 Hb_000300_570 Hb_001489_030--Hb_000300_570 Hb_002917_030 Hb_002917_030 Hb_001489_030--Hb_002917_030 Hb_000265_010 Hb_000265_010 Hb_001489_030--Hb_000265_010 Hb_012053_030 Hb_012053_030 Hb_001489_030--Hb_012053_030 Hb_001761_040 Hb_001761_040 Hb_004619_010--Hb_001761_040 Hb_007666_040 Hb_007666_040 Hb_004619_010--Hb_007666_040 Hb_169388_010 Hb_169388_010 Hb_004619_010--Hb_169388_010 Hb_003385_090 Hb_003385_090 Hb_004619_010--Hb_003385_090 Hb_032651_060 Hb_032651_060 Hb_004619_010--Hb_032651_060 Hb_151364_010 Hb_151364_010 Hb_004619_010--Hb_151364_010 Hb_067034_030 Hb_067034_030 Hb_000679_240--Hb_067034_030 Hb_000589_180 Hb_000589_180 Hb_000679_240--Hb_000589_180 Hb_000679_240--Hb_000521_300 Hb_000679_240--Hb_002555_020 Hb_000679_240--Hb_000086_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0305644 1.60915 0.0304171 0.0849769 0.0136518 0.0392267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0620769 0.0244188 0.0458874 1.30601 0.153291

CAGE analysis