Hb_001761_040

Information

Type -
Description -
Location Contig1761: 46448-51545
Sequence    

Annotation

kegg
ID rcu:RCOM_1573440
description Cycloartenol synthase, putative (EC:5.4.99.8)
nr
ID XP_012087449.1
description PREDICTED: beta-amyrin synthase-like [Jatropha curcas]
swissprot
ID Q8W3Z1
description Beta-amyrin synthase OS=Betula platyphylla GN=OSCBPY PE=1 SV=1
trembl
ID A0A067JQB7
description Terpene cyclase/mutase family member OS=Jatropha curcas GN=JCGZ_22568 PE=3 SV=1
Gene Ontology
ID GO:0016866
description beta-amyrin synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001761_040 0.0 - - PREDICTED: beta-amyrin synthase-like [Jatropha curcas]
2 Hb_004619_010 0.0964831833 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
3 Hb_052186_010 0.1271365526 - - hypothetical protein JCGZ_17055 [Jatropha curcas]
4 Hb_008053_070 0.1387946722 - - PREDICTED: U-box domain-containing protein 33-like isoform X4 [Jatropha curcas]
5 Hb_007666_040 0.1429291543 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]
6 Hb_032651_060 0.1438359317 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_151364_010 0.1445582092 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
8 Hb_169388_010 0.1472974737 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
9 Hb_032582_010 0.1499092147 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
10 Hb_008503_020 0.1513732483 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
11 Hb_003385_090 0.155252751 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
12 Hb_005622_080 0.1571770303 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
13 Hb_132270_010 0.160299738 - - hypothetical protein JCGZ_25438 [Jatropha curcas]
14 Hb_002677_010 0.1657481753 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2 [Populus euphratica]
15 Hb_001489_030 0.166405592 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
16 Hb_002555_020 0.1678389506 - - Receptor-like protein kinase [Medicago truncatula]
17 Hb_000905_030 0.1689320398 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
18 Hb_008616_020 0.169158791 - - unnamed protein product [Vitis vinifera]
19 Hb_032443_030 0.1691630424 - - PREDICTED: protein SRG1-like [Jatropha curcas]
20 Hb_002986_110 0.1699892403 - - PREDICTED: patatin-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001761_040 Hb_001761_040 Hb_004619_010 Hb_004619_010 Hb_001761_040--Hb_004619_010 Hb_052186_010 Hb_052186_010 Hb_001761_040--Hb_052186_010 Hb_008053_070 Hb_008053_070 Hb_001761_040--Hb_008053_070 Hb_007666_040 Hb_007666_040 Hb_001761_040--Hb_007666_040 Hb_032651_060 Hb_032651_060 Hb_001761_040--Hb_032651_060 Hb_151364_010 Hb_151364_010 Hb_001761_040--Hb_151364_010 Hb_004619_010--Hb_007666_040 Hb_169388_010 Hb_169388_010 Hb_004619_010--Hb_169388_010 Hb_003385_090 Hb_003385_090 Hb_004619_010--Hb_003385_090 Hb_004619_010--Hb_032651_060 Hb_004619_010--Hb_151364_010 Hb_011552_020 Hb_011552_020 Hb_052186_010--Hb_011552_020 Hb_132270_010 Hb_132270_010 Hb_052186_010--Hb_132270_010 Hb_008503_020 Hb_008503_020 Hb_052186_010--Hb_008503_020 Hb_001864_010 Hb_001864_010 Hb_052186_010--Hb_001864_010 Hb_052186_010--Hb_151364_010 Hb_008616_020 Hb_008616_020 Hb_008053_070--Hb_008616_020 Hb_000185_060 Hb_000185_060 Hb_008053_070--Hb_000185_060 Hb_032582_010 Hb_032582_010 Hb_008053_070--Hb_032582_010 Hb_012053_030 Hb_012053_030 Hb_008053_070--Hb_012053_030 Hb_002677_010 Hb_002677_010 Hb_008053_070--Hb_002677_010 Hb_001376_040 Hb_001376_040 Hb_008053_070--Hb_001376_040 Hb_003117_060 Hb_003117_060 Hb_007666_040--Hb_003117_060 Hb_007666_040--Hb_003385_090 Hb_000535_030 Hb_000535_030 Hb_007666_040--Hb_000535_030 Hb_007666_040--Hb_012053_030 Hb_001114_210 Hb_001114_210 Hb_007666_040--Hb_001114_210 Hb_001489_030 Hb_001489_030 Hb_007666_040--Hb_001489_030 Hb_032651_060--Hb_003385_090 Hb_032651_060--Hb_000535_030 Hb_049562_010 Hb_049562_010 Hb_032651_060--Hb_049562_010 Hb_001080_040 Hb_001080_040 Hb_032651_060--Hb_001080_040 Hb_001363_010 Hb_001363_010 Hb_032651_060--Hb_001363_010 Hb_005649_120 Hb_005649_120 Hb_032651_060--Hb_005649_120 Hb_005489_160 Hb_005489_160 Hb_151364_010--Hb_005489_160 Hb_151364_010--Hb_008053_070 Hb_000300_570 Hb_000300_570 Hb_151364_010--Hb_000300_570 Hb_151364_010--Hb_012053_030 Hb_005797_030 Hb_005797_030 Hb_151364_010--Hb_005797_030 Hb_002007_230 Hb_002007_230 Hb_151364_010--Hb_002007_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.03319 1.79439 0.012957 0.00628825 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0282229 1.64303 0.12586

CAGE analysis