Hb_132270_010

Information

Type -
Description -
Location Contig132270: 12082-13209
Sequence    

Annotation

kegg
ID pop:POPTR_0019s039902
description hypothetical protein
nr
ID KDP24702.1
description hypothetical protein JCGZ_25438 [Jatropha curcas]
swissprot
ID B9RI00
description Probable terpene synthase 6 OS=Ricinus communis GN=TPS6 PE=3 SV=1
trembl
ID A0A067JLF4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25438 PE=4 SV=1
Gene Ontology
ID GO:0000287
description probable terpene synthase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09296: 11880-13209
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132270_010 0.0 - - hypothetical protein JCGZ_25438 [Jatropha curcas]
2 Hb_004195_050 0.0749153372 - - -
3 Hb_007382_060 0.0749156162 - - -
4 Hb_000000_220 0.0750267303 - - protein with unknown function [Ricinus communis]
5 Hb_007658_020 0.0750454082 - - Beta-amyrin synthase [Glycine soja]
6 Hb_151236_010 0.0753326747 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
7 Hb_001168_080 0.0755593389 - - kinase, putative [Ricinus communis]
8 Hb_002138_030 0.0757950743 - - -
9 Hb_010839_020 0.0761852418 - - -
10 Hb_083377_010 0.0801752599 - - unnamed protein product [Vitis vinifera]
11 Hb_001719_030 0.080410094 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_008397_020 0.0806704022 - - polyprotein [Oryza australiensis]
13 Hb_003735_010 0.0807216556 - - -
14 Hb_004918_040 0.0815357606 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003010_060 0.0846529571 - - Patatin T5 precursor, putative [Ricinus communis]
16 Hb_005436_020 0.0860219373 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_005656_090 0.0880930091 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]
18 Hb_010139_010 0.0886125807 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
19 Hb_001427_130 0.0889723355 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
20 Hb_032215_070 0.0905164045 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_132270_010 Hb_132270_010 Hb_004195_050 Hb_004195_050 Hb_132270_010--Hb_004195_050 Hb_007382_060 Hb_007382_060 Hb_132270_010--Hb_007382_060 Hb_000000_220 Hb_000000_220 Hb_132270_010--Hb_000000_220 Hb_007658_020 Hb_007658_020 Hb_132270_010--Hb_007658_020 Hb_151236_010 Hb_151236_010 Hb_132270_010--Hb_151236_010 Hb_001168_080 Hb_001168_080 Hb_132270_010--Hb_001168_080 Hb_004195_050--Hb_007382_060 Hb_004195_050--Hb_000000_220 Hb_004195_050--Hb_007658_020 Hb_004195_050--Hb_151236_010 Hb_002138_030 Hb_002138_030 Hb_004195_050--Hb_002138_030 Hb_010839_020 Hb_010839_020 Hb_004195_050--Hb_010839_020 Hb_007382_060--Hb_000000_220 Hb_007382_060--Hb_007658_020 Hb_007382_060--Hb_151236_010 Hb_007382_060--Hb_002138_030 Hb_007382_060--Hb_010839_020 Hb_000000_220--Hb_007658_020 Hb_000000_220--Hb_151236_010 Hb_000000_220--Hb_002138_030 Hb_000000_220--Hb_010839_020 Hb_007658_020--Hb_151236_010 Hb_007658_020--Hb_002138_030 Hb_007658_020--Hb_010839_020 Hb_151236_010--Hb_002138_030 Hb_151236_010--Hb_010839_020 Hb_000905_030 Hb_000905_030 Hb_001168_080--Hb_000905_030 Hb_001168_080--Hb_151236_010 Hb_001168_080--Hb_002138_030 Hb_001168_080--Hb_010839_020 Hb_001168_080--Hb_004195_050 Hb_001168_080--Hb_007382_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.65672 0.0278312 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.43704 0.131501

CAGE analysis