Hb_004586_330

Information

Type -
Description -
Location Contig4586: 361380-363284
Sequence    

Annotation

kegg
ID rcu:RCOM_1038540
description hypothetical protein
nr
ID XP_002514001.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJT2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1038540 PE=4 SV=1
Gene Ontology
ID GO:0016757
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43569: 361411-362385
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_330 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001491_040 0.1696022478 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
3 Hb_000302_100 0.184841838 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
4 Hb_003647_040 0.1929371482 - - conserved hypothetical protein [Ricinus communis]
5 Hb_018118_030 0.2036688206 - - PREDICTED: putative multidrug resistance protein, partial [Musa acuminata subsp. malaccensis]
6 Hb_066514_010 0.2097623906 - - hypothetical protein RCOM_0204720 [Ricinus communis]
7 Hb_002675_090 0.2098281193 - - conserved hypothetical protein [Ricinus communis]
8 Hb_160405_010 0.2102471891 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
9 Hb_000189_070 0.2117743658 transcription factor TF Family: AUX/IAA Auxin-induced protein 22D, putative [Ricinus communis]
10 Hb_001357_030 0.2117988192 - - hypothetical protein F383_04880 [Gossypium arboreum]
11 Hb_006907_050 0.2168415584 - - unnamed protein product [Coffea canephora]
12 Hb_002119_040 0.216872468 - - receptor protein kinase, putative [Ricinus communis]
13 Hb_002173_030 0.2192491018 - - hypothetical protein JCGZ_12466 [Jatropha curcas]
14 Hb_001124_110 0.2198788746 - - PREDICTED: sodium/hydrogen exchanger 2-like isoform X2 [Jatropha curcas]
15 Hb_000300_230 0.2239318625 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
16 Hb_063716_090 0.2250002636 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002900_100 0.2293191818 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
18 Hb_002272_200 0.229985279 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
19 Hb_000094_190 0.2311657389 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
20 Hb_000320_030 0.2325649458 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]

Gene co-expression network

sample Hb_004586_330 Hb_004586_330 Hb_001491_040 Hb_001491_040 Hb_004586_330--Hb_001491_040 Hb_000302_100 Hb_000302_100 Hb_004586_330--Hb_000302_100 Hb_003647_040 Hb_003647_040 Hb_004586_330--Hb_003647_040 Hb_018118_030 Hb_018118_030 Hb_004586_330--Hb_018118_030 Hb_066514_010 Hb_066514_010 Hb_004586_330--Hb_066514_010 Hb_002675_090 Hb_002675_090 Hb_004586_330--Hb_002675_090 Hb_001491_040--Hb_003647_040 Hb_002119_040 Hb_002119_040 Hb_001491_040--Hb_002119_040 Hb_002000_090 Hb_002000_090 Hb_001491_040--Hb_002000_090 Hb_005694_180 Hb_005694_180 Hb_001491_040--Hb_005694_180 Hb_002235_410 Hb_002235_410 Hb_001491_040--Hb_002235_410 Hb_000302_100--Hb_066514_010 Hb_002272_200 Hb_002272_200 Hb_000302_100--Hb_002272_200 Hb_001357_030 Hb_001357_030 Hb_000302_100--Hb_001357_030 Hb_160405_010 Hb_160405_010 Hb_000302_100--Hb_160405_010 Hb_007575_090 Hb_007575_090 Hb_000302_100--Hb_007575_090 Hb_001329_020 Hb_001329_020 Hb_000302_100--Hb_001329_020 Hb_012727_010 Hb_012727_010 Hb_003647_040--Hb_012727_010 Hb_003647_040--Hb_002119_040 Hb_000032_430 Hb_000032_430 Hb_003647_040--Hb_000032_430 Hb_000866_320 Hb_000866_320 Hb_003647_040--Hb_000866_320 Hb_000189_070 Hb_000189_070 Hb_003647_040--Hb_000189_070 Hb_000384_110 Hb_000384_110 Hb_018118_030--Hb_000384_110 Hb_144096_010 Hb_144096_010 Hb_018118_030--Hb_144096_010 Hb_000931_020 Hb_000931_020 Hb_018118_030--Hb_000931_020 Hb_005188_030 Hb_005188_030 Hb_018118_030--Hb_005188_030 Hb_063716_090 Hb_063716_090 Hb_018118_030--Hb_063716_090 Hb_135757_010 Hb_135757_010 Hb_018118_030--Hb_135757_010 Hb_002900_100 Hb_002900_100 Hb_066514_010--Hb_002900_100 Hb_011918_010 Hb_011918_010 Hb_066514_010--Hb_011918_010 Hb_007441_090 Hb_007441_090 Hb_066514_010--Hb_007441_090 Hb_002490_030 Hb_002490_030 Hb_066514_010--Hb_002490_030 Hb_118507_010 Hb_118507_010 Hb_066514_010--Hb_118507_010 Hb_002675_090--Hb_002900_100 Hb_002675_090--Hb_066514_010 Hb_145317_010 Hb_145317_010 Hb_002675_090--Hb_145317_010 Hb_000069_620 Hb_000069_620 Hb_002675_090--Hb_000069_620 Hb_008119_030 Hb_008119_030 Hb_002675_090--Hb_008119_030 Hb_000637_020 Hb_000637_020 Hb_002675_090--Hb_000637_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.139115 0.661526 0.405541 1.88187 0.392022 0.0432522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.130317 0.0256305 0.0961705 0.440145 0.0535362

CAGE analysis