Hb_005618_130

Information

Type -
Description -
Location Contig5618: 110824-114611
Sequence    

Annotation

kegg
ID rcu:RCOM_2127210
description Polygalacturonase precursor, putative (EC:3.2.1.67)
nr
ID XP_012083013.1
description PREDICTED: probable polygalacturonase [Jatropha curcas]
swissprot
ID A7PZL3
description Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1
trembl
ID A0A067K7V2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14116 PE=3 SV=1
Gene Ontology
ID GO:0004650
description probable polygalacturonase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48835: 111289-112585 , PASA_asmbl_48836: 112857-114244
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005618_130 0.0 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
2 Hb_003674_020 0.167875199 - - PREDICTED: DNA replication licensing factor MCM6 [Jatropha curcas]
3 Hb_003929_190 0.172890505 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
4 Hb_008026_010 0.1747922198 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 9 [Jatropha curcas]
5 Hb_002681_120 0.1762928572 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
6 Hb_002687_020 0.182479129 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001619_100 0.1841526513 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
8 Hb_003029_060 0.199067256 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
9 Hb_000237_020 0.2001075686 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
10 Hb_001195_420 0.2065060719 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
11 Hb_069659_010 0.2065796883 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
12 Hb_002093_050 0.2068146245 - - hypothetical protein POPTR_0008s02940g [Populus trichocarpa]
13 Hb_000274_050 0.2069414737 - - Squalene monooxygenase, putative [Ricinus communis]
14 Hb_030694_010 0.2071453118 - - PREDICTED: endoglucanase 25-like [Solanum tuberosum]
15 Hb_002876_200 0.2075145633 - - PREDICTED: uncharacterized protein LOC105641209 isoform X1 [Jatropha curcas]
16 Hb_000203_070 0.207991987 - - PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
17 Hb_000581_030 0.2092498865 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004746_010 0.213564855 - - aldo/keto reductase, putative [Ricinus communis]
19 Hb_019654_060 0.2142625274 - - PREDICTED: rop guanine nucleotide exchange factor 1-like isoform X1 [Jatropha curcas]
20 Hb_003050_100 0.2170019281 - - PREDICTED: uncharacterized protein LOC105633987 [Jatropha curcas]

Gene co-expression network

sample Hb_005618_130 Hb_005618_130 Hb_003674_020 Hb_003674_020 Hb_005618_130--Hb_003674_020 Hb_003929_190 Hb_003929_190 Hb_005618_130--Hb_003929_190 Hb_008026_010 Hb_008026_010 Hb_005618_130--Hb_008026_010 Hb_002681_120 Hb_002681_120 Hb_005618_130--Hb_002681_120 Hb_002687_020 Hb_002687_020 Hb_005618_130--Hb_002687_020 Hb_001619_100 Hb_001619_100 Hb_005618_130--Hb_001619_100 Hb_007590_110 Hb_007590_110 Hb_003674_020--Hb_007590_110 Hb_129996_010 Hb_129996_010 Hb_003674_020--Hb_129996_010 Hb_004846_080 Hb_004846_080 Hb_003674_020--Hb_004846_080 Hb_001476_130 Hb_001476_130 Hb_003674_020--Hb_001476_130 Hb_000696_030 Hb_000696_030 Hb_003674_020--Hb_000696_030 Hb_001782_100 Hb_001782_100 Hb_003674_020--Hb_001782_100 Hb_000012_400 Hb_000012_400 Hb_003929_190--Hb_000012_400 Hb_002539_050 Hb_002539_050 Hb_003929_190--Hb_002539_050 Hb_003029_060 Hb_003029_060 Hb_003929_190--Hb_003029_060 Hb_005941_030 Hb_005941_030 Hb_003929_190--Hb_005941_030 Hb_000071_160 Hb_000071_160 Hb_003929_190--Hb_000071_160 Hb_000203_070 Hb_000203_070 Hb_003929_190--Hb_000203_070 Hb_074419_010 Hb_074419_010 Hb_008026_010--Hb_074419_010 Hb_030685_010 Hb_030685_010 Hb_008026_010--Hb_030685_010 Hb_005215_060 Hb_005215_060 Hb_008026_010--Hb_005215_060 Hb_000363_260 Hb_000363_260 Hb_008026_010--Hb_000363_260 Hb_008026_010--Hb_002681_120 Hb_003540_120 Hb_003540_120 Hb_002681_120--Hb_003540_120 Hb_002681_120--Hb_000363_260 Hb_019654_060 Hb_019654_060 Hb_002681_120--Hb_019654_060 Hb_001119_070 Hb_001119_070 Hb_002681_120--Hb_001119_070 Hb_000581_030 Hb_000581_030 Hb_002681_120--Hb_000581_030 Hb_002681_120--Hb_003929_190 Hb_069659_010 Hb_069659_010 Hb_002687_020--Hb_069659_010 Hb_000442_130 Hb_000442_130 Hb_002687_020--Hb_000442_130 Hb_002687_020--Hb_003929_190 Hb_002687_020--Hb_000012_400 Hb_030565_110 Hb_030565_110 Hb_002687_020--Hb_030565_110 Hb_002367_110 Hb_002367_110 Hb_002687_020--Hb_002367_110 Hb_004958_010 Hb_004958_010 Hb_001619_100--Hb_004958_010 Hb_102710_010 Hb_102710_010 Hb_001619_100--Hb_102710_010 Hb_023226_030 Hb_023226_030 Hb_001619_100--Hb_023226_030 Hb_001195_420 Hb_001195_420 Hb_001619_100--Hb_001195_420 Hb_002518_090 Hb_002518_090 Hb_001619_100--Hb_002518_090 Hb_000791_050 Hb_000791_050 Hb_001619_100--Hb_000791_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.96699 1.32154 6.92083 9.69545 2.09059 1.8298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0201838 0 0.0603888 5.98448 2.52438

CAGE analysis