Hb_004958_010

Information

Type -
Description -
Location Contig4958: 631-1161
Sequence    

Annotation

kegg
ID rcu:RCOM_0189870
description hypothetical protein
nr
ID XP_002531969.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T151
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0189870 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45460: 578-1556
cDNA
(Sanger)
(ID:Location)		 028_J02.ab1: 578-29897 , 043_E05.ab1: 578-39226

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004958_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001619_100 0.1325938146 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
3 Hb_001195_420 0.1450468026 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
4 Hb_102710_010 0.1518295194 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
5 Hb_159582_010 0.1529888594 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
6 Hb_023226_030 0.1554206349 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
7 Hb_001775_070 0.1579948677 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
8 Hb_003430_080 0.1631143937 - - zinc finger protein, putative [Ricinus communis]
9 Hb_002774_120 0.1652925729 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
10 Hb_000740_090 0.1660485607 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001053_210 0.1668146939 - - -
12 Hb_000309_030 0.1702350508 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
13 Hb_000012_400 0.1729853689 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
14 Hb_004958_020 0.1758752209 - - PREDICTED: uncharacterized protein LOC104609039 [Nelumbo nucifera]
15 Hb_000791_050 0.1782200344 - - PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]
16 Hb_139785_020 0.1796021654 - - PREDICTED: uncharacterized protein LOC105641137 [Jatropha curcas]
17 Hb_005694_180 0.1804598172 - - PREDICTED: cytochrome b5 [Jatropha curcas]
18 Hb_010050_020 0.1817852493 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
19 Hb_000003_030 0.1829900533 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_027380_150 0.1850664393 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004958_010 Hb_004958_010 Hb_001619_100 Hb_001619_100 Hb_004958_010--Hb_001619_100 Hb_001195_420 Hb_001195_420 Hb_004958_010--Hb_001195_420 Hb_102710_010 Hb_102710_010 Hb_004958_010--Hb_102710_010 Hb_159582_010 Hb_159582_010 Hb_004958_010--Hb_159582_010 Hb_023226_030 Hb_023226_030 Hb_004958_010--Hb_023226_030 Hb_001775_070 Hb_001775_070 Hb_004958_010--Hb_001775_070 Hb_001619_100--Hb_102710_010 Hb_001619_100--Hb_023226_030 Hb_001619_100--Hb_001195_420 Hb_002518_090 Hb_002518_090 Hb_001619_100--Hb_002518_090 Hb_000791_050 Hb_000791_050 Hb_001619_100--Hb_000791_050 Hb_001009_150 Hb_001009_150 Hb_001195_420--Hb_001009_150 Hb_003430_080 Hb_003430_080 Hb_001195_420--Hb_003430_080 Hb_000363_180 Hb_000363_180 Hb_001195_420--Hb_000363_180 Hb_005694_180 Hb_005694_180 Hb_001195_420--Hb_005694_180 Hb_000012_400 Hb_000012_400 Hb_001195_420--Hb_000012_400 Hb_001221_390 Hb_001221_390 Hb_001195_420--Hb_001221_390 Hb_002681_120 Hb_002681_120 Hb_102710_010--Hb_002681_120 Hb_002774_120 Hb_002774_120 Hb_102710_010--Hb_002774_120 Hb_000581_030 Hb_000581_030 Hb_102710_010--Hb_000581_030 Hb_027380_150 Hb_027380_150 Hb_102710_010--Hb_027380_150 Hb_000032_430 Hb_000032_430 Hb_159582_010--Hb_000032_430 Hb_160405_010 Hb_160405_010 Hb_159582_010--Hb_160405_010 Hb_032208_050 Hb_032208_050 Hb_159582_010--Hb_032208_050 Hb_106099_010 Hb_106099_010 Hb_159582_010--Hb_106099_010 Hb_000740_090 Hb_000740_090 Hb_159582_010--Hb_000740_090 Hb_034507_060 Hb_034507_060 Hb_023226_030--Hb_034507_060 Hb_023226_030--Hb_003430_080 Hb_172706_020 Hb_172706_020 Hb_023226_030--Hb_172706_020 Hb_023226_030--Hb_005694_180 Hb_000309_030 Hb_000309_030 Hb_023226_030--Hb_000309_030 Hb_023226_030--Hb_001195_420 Hb_004958_020 Hb_004958_020 Hb_001775_070--Hb_004958_020 Hb_001775_070--Hb_102710_010 Hb_001619_030 Hb_001619_030 Hb_001775_070--Hb_001619_030 Hb_139785_020 Hb_139785_020 Hb_001775_070--Hb_139785_020 Hb_001141_230 Hb_001141_230 Hb_001775_070--Hb_001141_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.0933 60.9641 89.9511 200.417 10.784 13.5728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.1296 4.78497 0 105.079 57.8001

CAGE analysis