Hb_102710_010

Information

Type -
Description -
Location Contig102710: 2186-3383
Sequence    

Annotation

kegg
ID pop:POPTR_0006s22820g
description hypothetical protein
nr
ID XP_006381980.1
description hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GEB8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s22820g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01130: 1500-1621
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102710_010 0.0 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
2 Hb_004958_010 0.1518295194 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001619_100 0.1533605411 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
4 Hb_002681_120 0.1612481139 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
5 Hb_002774_120 0.1853877443 - - PREDICTED: uncharacterized protein LOC105630593 [Jatropha curcas]
6 Hb_000581_030 0.1872810714 - - conserved hypothetical protein [Ricinus communis]
7 Hb_027380_150 0.1882780775 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001178_090 0.1887455933 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
9 Hb_003029_060 0.1900821463 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
10 Hb_019654_060 0.1903226964 - - PREDICTED: rop guanine nucleotide exchange factor 1-like isoform X1 [Jatropha curcas]
11 Hb_003540_120 0.1922659477 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_003929_190 0.1931147935 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
13 Hb_000309_030 0.1946754156 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
14 Hb_000003_030 0.1950639048 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000776_040 0.1952948703 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X3 [Jatropha curcas]
16 Hb_004545_040 0.1975973798 - - PREDICTED: coiled-coil domain-containing protein SCD2-like [Jatropha curcas]
17 Hb_001329_180 0.1983170708 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
18 Hb_000012_400 0.1995164736 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
19 Hb_001545_130 0.2014575058 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
20 Hb_000791_050 0.2036836256 - - PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]

Gene co-expression network

sample Hb_102710_010 Hb_102710_010 Hb_004958_010 Hb_004958_010 Hb_102710_010--Hb_004958_010 Hb_001619_100 Hb_001619_100 Hb_102710_010--Hb_001619_100 Hb_002681_120 Hb_002681_120 Hb_102710_010--Hb_002681_120 Hb_002774_120 Hb_002774_120 Hb_102710_010--Hb_002774_120 Hb_000581_030 Hb_000581_030 Hb_102710_010--Hb_000581_030 Hb_027380_150 Hb_027380_150 Hb_102710_010--Hb_027380_150 Hb_004958_010--Hb_001619_100 Hb_001195_420 Hb_001195_420 Hb_004958_010--Hb_001195_420 Hb_159582_010 Hb_159582_010 Hb_004958_010--Hb_159582_010 Hb_023226_030 Hb_023226_030 Hb_004958_010--Hb_023226_030 Hb_001775_070 Hb_001775_070 Hb_004958_010--Hb_001775_070 Hb_001619_100--Hb_023226_030 Hb_001619_100--Hb_001195_420 Hb_002518_090 Hb_002518_090 Hb_001619_100--Hb_002518_090 Hb_000791_050 Hb_000791_050 Hb_001619_100--Hb_000791_050 Hb_003540_120 Hb_003540_120 Hb_002681_120--Hb_003540_120 Hb_000363_260 Hb_000363_260 Hb_002681_120--Hb_000363_260 Hb_019654_060 Hb_019654_060 Hb_002681_120--Hb_019654_060 Hb_001119_070 Hb_001119_070 Hb_002681_120--Hb_001119_070 Hb_002681_120--Hb_000581_030 Hb_003929_190 Hb_003929_190 Hb_002681_120--Hb_003929_190 Hb_002774_120--Hb_000363_260 Hb_000684_220 Hb_000684_220 Hb_002774_120--Hb_000684_220 Hb_006570_090 Hb_006570_090 Hb_002774_120--Hb_006570_090 Hb_002774_120--Hb_003929_190 Hb_179960_010 Hb_179960_010 Hb_002774_120--Hb_179960_010 Hb_002774_120--Hb_003540_120 Hb_000003_030 Hb_000003_030 Hb_000581_030--Hb_000003_030 Hb_000581_030--Hb_019654_060 Hb_000940_210 Hb_000940_210 Hb_000581_030--Hb_000940_210 Hb_000237_020 Hb_000237_020 Hb_000581_030--Hb_000237_020 Hb_004032_210 Hb_004032_210 Hb_000581_030--Hb_004032_210 Hb_003740_020 Hb_003740_020 Hb_000581_030--Hb_003740_020 Hb_027380_150--Hb_000791_050 Hb_010050_020 Hb_010050_020 Hb_027380_150--Hb_010050_020 Hb_000776_040 Hb_000776_040 Hb_027380_150--Hb_000776_040 Hb_021409_070 Hb_021409_070 Hb_027380_150--Hb_021409_070 Hb_189003_070 Hb_189003_070 Hb_027380_150--Hb_189003_070 Hb_012807_150 Hb_012807_150 Hb_027380_150--Hb_012807_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00247 0.558998 2.2532 4.95813 0.102556 0.846084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.48117 0.189029 0 2.6501 1.92483

CAGE analysis