Hb_004958_020

Information

Type -
Description -
Location Contig4958: 29429-39620
Sequence    

Annotation

kegg
ID cic:CICLE_v10032630mg
description hypothetical protein
nr
ID XP_010273528.1
description PREDICTED: uncharacterized protein LOC104609039 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A0A022R8S5
description Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a022824mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45461: 38467-39269
cDNA
(Sanger)
(ID:Location)		 028_J02.ab1: 578-29897 , 042_G07.ab1: 38467-39269 , 043_E05.ab1: 578-39226

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004958_020 0.0 - - PREDICTED: uncharacterized protein LOC104609039 [Nelumbo nucifera]
2 Hb_000003_020 0.1388300414 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
3 Hb_002739_040 0.1408692333 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
4 Hb_000318_170 0.1499166617 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
5 Hb_139785_020 0.1505282556 - - PREDICTED: uncharacterized protein LOC105641137 [Jatropha curcas]
6 Hb_001894_010 0.1512318489 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
7 Hb_078081_010 0.1612657761 - - hypothetical protein PRUPE_ppa015726mg [Prunus persica]
8 Hb_029584_100 0.1621508664 - - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Gossypium arboreum]
9 Hb_002527_060 0.1653242228 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
10 Hb_000309_030 0.1683436507 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
11 Hb_008566_080 0.1686597529 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
12 Hb_001247_270 0.1698325652 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
13 Hb_004324_030 0.1715450949 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
14 Hb_002307_010 0.1716924523 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
15 Hb_000959_120 0.1718358421 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
16 Hb_004958_010 0.1758752209 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000261_310 0.1764366953 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
18 Hb_000791_050 0.1778369375 - - PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]
19 Hb_007134_030 0.1796134936 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
20 Hb_000116_240 0.1798766537 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_004958_020 Hb_004958_020 Hb_000003_020 Hb_000003_020 Hb_004958_020--Hb_000003_020 Hb_002739_040 Hb_002739_040 Hb_004958_020--Hb_002739_040 Hb_000318_170 Hb_000318_170 Hb_004958_020--Hb_000318_170 Hb_139785_020 Hb_139785_020 Hb_004958_020--Hb_139785_020 Hb_001894_010 Hb_001894_010 Hb_004958_020--Hb_001894_010 Hb_078081_010 Hb_078081_010 Hb_004958_020--Hb_078081_010 Hb_003142_060 Hb_003142_060 Hb_000003_020--Hb_003142_060 Hb_000003_020--Hb_002739_040 Hb_004324_030 Hb_004324_030 Hb_000003_020--Hb_004324_030 Hb_004079_100 Hb_004079_100 Hb_000003_020--Hb_004079_100 Hb_000085_380 Hb_000085_380 Hb_000003_020--Hb_000085_380 Hb_003106_230 Hb_003106_230 Hb_000003_020--Hb_003106_230 Hb_002739_040--Hb_004324_030 Hb_002739_040--Hb_003142_060 Hb_002739_040--Hb_004079_100 Hb_026549_050 Hb_026549_050 Hb_002739_040--Hb_026549_050 Hb_000834_040 Hb_000834_040 Hb_002739_040--Hb_000834_040 Hb_005485_070 Hb_005485_070 Hb_000318_170--Hb_005485_070 Hb_000791_050 Hb_000791_050 Hb_000318_170--Hb_000791_050 Hb_000309_030 Hb_000309_030 Hb_000318_170--Hb_000309_030 Hb_000116_240 Hb_000116_240 Hb_000318_170--Hb_000116_240 Hb_000731_210 Hb_000731_210 Hb_000318_170--Hb_000731_210 Hb_007575_030 Hb_007575_030 Hb_000318_170--Hb_007575_030 Hb_001141_230 Hb_001141_230 Hb_139785_020--Hb_001141_230 Hb_004958_010 Hb_004958_010 Hb_139785_020--Hb_004958_010 Hb_139785_020--Hb_000003_020 Hb_002267_100 Hb_002267_100 Hb_139785_020--Hb_002267_100 Hb_002307_010 Hb_002307_010 Hb_139785_020--Hb_002307_010 Hb_003092_050 Hb_003092_050 Hb_001894_010--Hb_003092_050 Hb_001894_010--Hb_005485_070 Hb_000590_070 Hb_000590_070 Hb_001894_010--Hb_000590_070 Hb_002527_060 Hb_002527_060 Hb_001894_010--Hb_002527_060 Hb_000120_740 Hb_000120_740 Hb_001894_010--Hb_000120_740 Hb_036388_010 Hb_036388_010 Hb_001894_010--Hb_036388_010 Hb_000186_290 Hb_000186_290 Hb_078081_010--Hb_000186_290 Hb_078081_010--Hb_002739_040 Hb_001040_200 Hb_001040_200 Hb_078081_010--Hb_001040_200 Hb_078081_010--Hb_000834_040 Hb_078081_010--Hb_002307_010 Hb_001663_120 Hb_001663_120 Hb_078081_010--Hb_001663_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.25189 12.8298 15.9578 35.3217 1.07804 0.890279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.22464 0.975104 0.104222 32.5911 22.9689

CAGE analysis