Hb_003541_010

Information

Type -
Description -
Location Contig3541: 32651-33881
Sequence    

Annotation

kegg
ID rcu:RCOM_1140940
description transcription factor, putative
nr
ID XP_002515806.1
description transcription factor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RPY7
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1140940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003541_010 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_000465_110 0.1626139142 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Jatropha curcas]
3 Hb_185494_010 0.1808173031 - - receptor protein kinase, putative [Ricinus communis]
4 Hb_003209_190 0.1839798375 - - hypothetical protein POPTR_0010s16770g [Populus trichocarpa]
5 Hb_019762_030 0.1855618567 - - hypothetical protein POPTR_0002s08720g [Populus trichocarpa]
6 Hb_000853_340 0.1862093665 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X2 [Populus euphratica]
7 Hb_063584_010 0.1909869262 - - hypothetical protein JCGZ_10530 [Jatropha curcas]
8 Hb_155874_020 0.1924259954 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
9 Hb_002443_010 0.1934180013 - - multicopper oxidase, putative [Ricinus communis]
10 Hb_003702_010 0.1962964042 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
11 Hb_005198_010 0.1964409584 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
12 Hb_008195_100 0.1967013043 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
13 Hb_002235_260 0.1981244798 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
14 Hb_000173_330 0.1982503043 - - PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera]
15 Hb_004117_060 0.198880661 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
16 Hb_000023_170 0.2009246986 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
17 Hb_000556_050 0.201326352 - - -
18 Hb_132840_060 0.2013507865 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
19 Hb_017358_060 0.2023451949 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
20 Hb_001926_010 0.2028129737 - - hypothetical protein Csa_2G383910 [Cucumis sativus]

Gene co-expression network

sample Hb_003541_010 Hb_003541_010 Hb_000465_110 Hb_000465_110 Hb_003541_010--Hb_000465_110 Hb_185494_010 Hb_185494_010 Hb_003541_010--Hb_185494_010 Hb_003209_190 Hb_003209_190 Hb_003541_010--Hb_003209_190 Hb_019762_030 Hb_019762_030 Hb_003541_010--Hb_019762_030 Hb_000853_340 Hb_000853_340 Hb_003541_010--Hb_000853_340 Hb_063584_010 Hb_063584_010 Hb_003541_010--Hb_063584_010 Hb_000465_110--Hb_019762_030 Hb_000465_110--Hb_000853_340 Hb_002235_260 Hb_002235_260 Hb_000465_110--Hb_002235_260 Hb_001921_040 Hb_001921_040 Hb_000465_110--Hb_001921_040 Hb_004117_060 Hb_004117_060 Hb_000465_110--Hb_004117_060 Hb_000173_330 Hb_000173_330 Hb_000465_110--Hb_000173_330 Hb_002443_010 Hb_002443_010 Hb_185494_010--Hb_002443_010 Hb_002540_060 Hb_002540_060 Hb_185494_010--Hb_002540_060 Hb_000574_380 Hb_000574_380 Hb_185494_010--Hb_000574_380 Hb_005197_030 Hb_005197_030 Hb_185494_010--Hb_005197_030 Hb_000347_170 Hb_000347_170 Hb_185494_010--Hb_000347_170 Hb_002918_170 Hb_002918_170 Hb_003209_190--Hb_002918_170 Hb_003077_010 Hb_003077_010 Hb_003209_190--Hb_003077_010 Hb_003387_010 Hb_003387_010 Hb_003209_190--Hb_003387_010 Hb_000110_240 Hb_000110_240 Hb_003209_190--Hb_000110_240 Hb_012084_010 Hb_012084_010 Hb_003209_190--Hb_012084_010 Hb_001218_060 Hb_001218_060 Hb_003209_190--Hb_001218_060 Hb_019762_030--Hb_000853_340 Hb_005198_010 Hb_005198_010 Hb_019762_030--Hb_005198_010 Hb_019762_030--Hb_002235_260 Hb_019762_030--Hb_004117_060 Hb_155874_020 Hb_155874_020 Hb_019762_030--Hb_155874_020 Hb_003702_010 Hb_003702_010 Hb_019762_030--Hb_003702_010 Hb_000853_340--Hb_155874_020 Hb_000853_340--Hb_003702_010 Hb_008195_100 Hb_008195_100 Hb_000853_340--Hb_008195_100 Hb_000023_170 Hb_000023_170 Hb_000853_340--Hb_000023_170 Hb_132840_060 Hb_132840_060 Hb_000853_340--Hb_132840_060 Hb_063584_010--Hb_000853_340 Hb_063584_010--Hb_155874_020 Hb_063584_010--Hb_019762_030 Hb_063584_010--Hb_000173_330 Hb_063584_010--Hb_132840_060 Hb_017358_060 Hb_017358_060 Hb_063584_010--Hb_017358_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.449676 0.033793 0.0403362 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0793954

CAGE analysis