Hb_005197_030

Information

Type transcription factor
Description TF Family: bHLH
Location Contig5197: 56048-57867
Sequence    

Annotation

kegg
ID vvi:100248894
description transcription factor bHLH71
nr
ID XP_011018549.1
description PREDICTED: transcription factor bHLH71-like isoform X2 [Populus euphratica]
swissprot
ID Q9C7T4
description Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2 SV=1
trembl
ID A0A067KAC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13618 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh71

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46660: 55753-56832 , PASA_asmbl_46661: 56905-57858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005197_030 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH71-like isoform X2 [Populus euphratica]
2 Hb_006649_100 0.131118186 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
3 Hb_000173_330 0.1332906643 - - PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera]
4 Hb_005375_100 0.1366407881 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
5 Hb_000347_170 0.1367859496 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
6 Hb_008195_100 0.1384040136 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
7 Hb_063584_010 0.1435566074 - - hypothetical protein JCGZ_10530 [Jatropha curcas]
8 Hb_003411_070 0.1440934408 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
9 Hb_003702_010 0.1481827436 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
10 Hb_000853_340 0.149994324 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X2 [Populus euphratica]
11 Hb_000465_110 0.1501015569 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Jatropha curcas]
12 Hb_002799_120 0.1503976146 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
13 Hb_000023_170 0.1514501231 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
14 Hb_155874_020 0.1525486984 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
15 Hb_005357_210 0.1534058875 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
16 Hb_031862_190 0.1551866995 - - -
17 Hb_009189_090 0.1553799235 - - protein phosphatase-2c, putative [Ricinus communis]
18 Hb_001329_060 0.1558590371 - - Polygalacturonase precursor, putative [Ricinus communis]
19 Hb_000431_080 0.1559924951 - - PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]
20 Hb_019762_030 0.15644675 - - hypothetical protein POPTR_0002s08720g [Populus trichocarpa]

Gene co-expression network

sample Hb_005197_030 Hb_005197_030 Hb_006649_100 Hb_006649_100 Hb_005197_030--Hb_006649_100 Hb_000173_330 Hb_000173_330 Hb_005197_030--Hb_000173_330 Hb_005375_100 Hb_005375_100 Hb_005197_030--Hb_005375_100 Hb_000347_170 Hb_000347_170 Hb_005197_030--Hb_000347_170 Hb_008195_100 Hb_008195_100 Hb_005197_030--Hb_008195_100 Hb_063584_010 Hb_063584_010 Hb_005197_030--Hb_063584_010 Hb_003411_070 Hb_003411_070 Hb_006649_100--Hb_003411_070 Hb_006649_100--Hb_005375_100 Hb_009293_030 Hb_009293_030 Hb_006649_100--Hb_009293_030 Hb_004223_120 Hb_004223_120 Hb_006649_100--Hb_004223_120 Hb_006649_100--Hb_000173_330 Hb_003702_010 Hb_003702_010 Hb_006649_100--Hb_003702_010 Hb_000173_330--Hb_003702_010 Hb_000853_340 Hb_000853_340 Hb_000173_330--Hb_000853_340 Hb_155874_020 Hb_155874_020 Hb_000173_330--Hb_155874_020 Hb_000023_170 Hb_000023_170 Hb_000173_330--Hb_000023_170 Hb_000173_330--Hb_008195_100 Hb_009189_090 Hb_009189_090 Hb_000173_330--Hb_009189_090 Hb_005375_100--Hb_008195_100 Hb_132840_060 Hb_132840_060 Hb_005375_100--Hb_132840_060 Hb_005375_100--Hb_000173_330 Hb_005375_100--Hb_155874_020 Hb_008032_010 Hb_008032_010 Hb_005375_100--Hb_008032_010 Hb_000347_170--Hb_004223_120 Hb_000347_170--Hb_006649_100 Hb_000347_170--Hb_003411_070 Hb_031862_190 Hb_031862_190 Hb_000347_170--Hb_031862_190 Hb_000347_170--Hb_009293_030 Hb_000187_100 Hb_000187_100 Hb_000347_170--Hb_000187_100 Hb_008195_100--Hb_155874_020 Hb_008195_100--Hb_003702_010 Hb_008195_100--Hb_000023_170 Hb_008195_100--Hb_132840_060 Hb_008195_100--Hb_000853_340 Hb_008195_100--Hb_009189_090 Hb_063584_010--Hb_000853_340 Hb_063584_010--Hb_155874_020 Hb_019762_030 Hb_019762_030 Hb_063584_010--Hb_019762_030 Hb_063584_010--Hb_000173_330 Hb_063584_010--Hb_132840_060 Hb_017358_060 Hb_017358_060 Hb_063584_010--Hb_017358_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0248072 0 9.81147 0.884318 0.0746892 0.260068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.113828 0 0.0818509 0.0180427 2.36391

CAGE analysis