Hb_185494_010

Information

Type -
Description -
Location Contig185494: 5-679
Sequence    

Annotation

kegg
ID rcu:RCOM_0656320
description receptor protein kinase, putative (EC:2.7.11.30)
nr
ID XP_002533445.1
description receptor protein kinase, putative [Ricinus communis]
swissprot
ID Q9LX29
description Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1
trembl
ID B9T5C6
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_0656320 PE=3 SV=1
Gene Ontology
ID GO:0009986
description serine threonine-protein kinase-like protein acr4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18140: 632-768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185494_010 0.0 - - receptor protein kinase, putative [Ricinus communis]
2 Hb_002443_010 0.1515843413 - - multicopper oxidase, putative [Ricinus communis]
3 Hb_002540_060 0.1617801245 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
4 Hb_000574_380 0.1726554461 - - hydrolase, putative [Ricinus communis]
5 Hb_005197_030 0.1760558559 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH71-like isoform X2 [Populus euphratica]
6 Hb_003541_010 0.1808173031 - - transcription factor, putative [Ricinus communis]
7 Hb_000347_170 0.1863233639 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
8 Hb_000173_330 0.1880737548 - - PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera]
9 Hb_004542_010 0.1943264924 - - Putative chloroplast RF19 [Medicago truncatula]
10 Hb_000465_110 0.1956745088 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Jatropha curcas]
11 Hb_002028_070 0.1959479437 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
12 Hb_005375_100 0.1964412178 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
13 Hb_000111_080 0.1971547424 - - hypothetical protein JCGZ_24534 [Jatropha curcas]
14 Hb_006649_100 0.198336825 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
15 Hb_165330_010 0.1991065881 - - BnaUnng00840D [Brassica napus]
16 Hb_000243_360 0.2008389218 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
17 Hb_001862_070 0.2021932603 - - hypothetical protein RCOM_1155060 [Ricinus communis]
18 Hb_000023_170 0.2032801407 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
19 Hb_009189_090 0.2034567388 - - protein phosphatase-2c, putative [Ricinus communis]
20 Hb_063584_010 0.2040406476 - - hypothetical protein JCGZ_10530 [Jatropha curcas]

Gene co-expression network

sample Hb_185494_010 Hb_185494_010 Hb_002443_010 Hb_002443_010 Hb_185494_010--Hb_002443_010 Hb_002540_060 Hb_002540_060 Hb_185494_010--Hb_002540_060 Hb_000574_380 Hb_000574_380 Hb_185494_010--Hb_000574_380 Hb_005197_030 Hb_005197_030 Hb_185494_010--Hb_005197_030 Hb_003541_010 Hb_003541_010 Hb_185494_010--Hb_003541_010 Hb_000347_170 Hb_000347_170 Hb_185494_010--Hb_000347_170 Hb_002443_010--Hb_003541_010 Hb_002443_010--Hb_000347_170 Hb_002942_150 Hb_002942_150 Hb_002443_010--Hb_002942_150 Hb_062773_010 Hb_062773_010 Hb_002443_010--Hb_062773_010 Hb_002443_010--Hb_002540_060 Hb_000028_150 Hb_000028_150 Hb_002540_060--Hb_000028_150 Hb_001343_120 Hb_001343_120 Hb_002540_060--Hb_001343_120 Hb_000110_240 Hb_000110_240 Hb_002540_060--Hb_000110_240 Hb_000207_140 Hb_000207_140 Hb_002540_060--Hb_000207_140 Hb_007479_010 Hb_007479_010 Hb_002540_060--Hb_007479_010 Hb_002435_090 Hb_002435_090 Hb_002540_060--Hb_002435_090 Hb_004223_120 Hb_004223_120 Hb_000574_380--Hb_004223_120 Hb_000574_380--Hb_000347_170 Hb_030565_020 Hb_030565_020 Hb_000574_380--Hb_030565_020 Hb_000264_160 Hb_000264_160 Hb_000574_380--Hb_000264_160 Hb_000431_080 Hb_000431_080 Hb_000574_380--Hb_000431_080 Hb_001401_050 Hb_001401_050 Hb_000574_380--Hb_001401_050 Hb_006649_100 Hb_006649_100 Hb_005197_030--Hb_006649_100 Hb_000173_330 Hb_000173_330 Hb_005197_030--Hb_000173_330 Hb_005375_100 Hb_005375_100 Hb_005197_030--Hb_005375_100 Hb_005197_030--Hb_000347_170 Hb_008195_100 Hb_008195_100 Hb_005197_030--Hb_008195_100 Hb_063584_010 Hb_063584_010 Hb_005197_030--Hb_063584_010 Hb_000465_110 Hb_000465_110 Hb_003541_010--Hb_000465_110 Hb_003209_190 Hb_003209_190 Hb_003541_010--Hb_003209_190 Hb_019762_030 Hb_019762_030 Hb_003541_010--Hb_019762_030 Hb_000853_340 Hb_000853_340 Hb_003541_010--Hb_000853_340 Hb_003541_010--Hb_063584_010 Hb_000347_170--Hb_004223_120 Hb_000347_170--Hb_006649_100 Hb_003411_070 Hb_003411_070 Hb_000347_170--Hb_003411_070 Hb_031862_190 Hb_031862_190 Hb_000347_170--Hb_031862_190 Hb_009293_030 Hb_009293_030 Hb_000347_170--Hb_009293_030 Hb_000187_100 Hb_000187_100 Hb_000347_170--Hb_000187_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.222856 0 6.20643 0.449313 0.325835 0.0980846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.066925 0 0.027275 1.84451

CAGE analysis