Hb_003209_190

Information

Type -
Description -
Location Contig3209: 96105-99678
Sequence    

Annotation

kegg
ID pop:POPTR_0010s16770g
description POPTRDRAFT_881100; hypothetical protein
nr
ID XP_002316098.1
description hypothetical protein POPTR_0010s16770g [Populus trichocarpa]
swissprot
ID P53535
description Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum GN=STP-1 PE=1 SV=1
trembl
ID B9HXL0
description Alpha-1,4 glucan phosphorylase OS=Populus trichocarpa GN=POPTR_0010s16770g PE=3 SV=1
Gene Ontology
ID GO:0008184
description alpha- glucan phosphorylase l-2 chloroplastic amyloplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003209_190 0.0 - - hypothetical protein POPTR_0010s16770g [Populus trichocarpa]
2 Hb_002918_170 0.1430686018 - - PREDICTED: MACPF domain-containing protein NSL1 [Jatropha curcas]
3 Hb_003077_010 0.1517728212 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_003387_010 0.1562275519 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
5 Hb_000110_240 0.1594673954 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
6 Hb_012084_010 0.162479748 - - cold regulated protein [Manihot esculenta]
7 Hb_001218_060 0.1653525849 - - conserved hypothetical protein [Ricinus communis]
8 Hb_089736_010 0.1656719897 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
9 Hb_001123_340 0.1723872722 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
10 Hb_000465_110 0.1731630959 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Jatropha curcas]
11 Hb_000431_080 0.1765812188 - - PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]
12 Hb_001606_040 0.1785146536 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
13 Hb_000637_080 0.1801782279 - - PREDICTED: protein YLS3 [Jatropha curcas]
14 Hb_000163_140 0.1804134761 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
15 Hb_000282_010 0.1804897925 - - conserved hypothetical protein [Ricinus communis]
16 Hb_054615_010 0.1809069274 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
17 Hb_005839_080 0.1810313962 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
18 Hb_088118_010 0.1818177115 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
19 Hb_104014_010 0.1825989081 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
20 Hb_103709_010 0.183092251 - - hypothetical protein JCGZ_06105 [Jatropha curcas]

Gene co-expression network

sample Hb_003209_190 Hb_003209_190 Hb_002918_170 Hb_002918_170 Hb_003209_190--Hb_002918_170 Hb_003077_010 Hb_003077_010 Hb_003209_190--Hb_003077_010 Hb_003387_010 Hb_003387_010 Hb_003209_190--Hb_003387_010 Hb_000110_240 Hb_000110_240 Hb_003209_190--Hb_000110_240 Hb_012084_010 Hb_012084_010 Hb_003209_190--Hb_012084_010 Hb_001218_060 Hb_001218_060 Hb_003209_190--Hb_001218_060 Hb_002918_170--Hb_003387_010 Hb_001958_030 Hb_001958_030 Hb_002918_170--Hb_001958_030 Hb_000188_070 Hb_000188_070 Hb_002918_170--Hb_000188_070 Hb_089736_010 Hb_089736_010 Hb_002918_170--Hb_089736_010 Hb_000163_140 Hb_000163_140 Hb_002918_170--Hb_000163_140 Hb_104014_010 Hb_104014_010 Hb_002918_170--Hb_104014_010 Hb_001606_040 Hb_001606_040 Hb_003077_010--Hb_001606_040 Hb_001123_340 Hb_001123_340 Hb_003077_010--Hb_001123_340 Hb_003077_010--Hb_104014_010 Hb_003077_010--Hb_089736_010 Hb_003077_010--Hb_001218_060 Hb_002121_030 Hb_002121_030 Hb_003077_010--Hb_002121_030 Hb_002710_040 Hb_002710_040 Hb_003387_010--Hb_002710_040 Hb_003387_010--Hb_089736_010 Hb_003387_010--Hb_001958_030 Hb_004223_120 Hb_004223_120 Hb_003387_010--Hb_004223_120 Hb_000084_210 Hb_000084_210 Hb_003387_010--Hb_000084_210 Hb_000494_010 Hb_000494_010 Hb_000110_240--Hb_000494_010 Hb_005116_130 Hb_005116_130 Hb_000110_240--Hb_005116_130 Hb_000500_330 Hb_000500_330 Hb_000110_240--Hb_000500_330 Hb_046590_010 Hb_046590_010 Hb_000110_240--Hb_046590_010 Hb_001579_190 Hb_001579_190 Hb_000110_240--Hb_001579_190 Hb_001442_050 Hb_001442_050 Hb_000110_240--Hb_001442_050 Hb_103709_010 Hb_103709_010 Hb_012084_010--Hb_103709_010 Hb_012084_010--Hb_001606_040 Hb_022406_010 Hb_022406_010 Hb_012084_010--Hb_022406_010 Hb_003964_050 Hb_003964_050 Hb_012084_010--Hb_003964_050 Hb_012084_010--Hb_001218_060 Hb_005839_080 Hb_005839_080 Hb_012084_010--Hb_005839_080 Hb_000282_010 Hb_000282_010 Hb_001218_060--Hb_000282_010 Hb_001218_060--Hb_001123_340 Hb_078954_020 Hb_078954_020 Hb_001218_060--Hb_078954_020 Hb_005511_080 Hb_005511_080 Hb_001218_060--Hb_005511_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0115081 0.252824 0.0212997 0.0130165 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00994582 0.0520922

CAGE analysis