Hb_007769_010

Information

Type -
Description -
Location Contig7769: 1152-3182
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q8RXC8
description Receptor-like cytosolic serine/threonine-protein kinase RBK2 OS=Arabidopsis thaliana GN=RBK2 PE=1 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007769_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_021931_030 0.0944767663 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
3 Hb_161981_020 0.0944912598 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_006124_010 0.0949274435 - - -
5 Hb_110822_020 0.0956029926 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
6 Hb_002081_250 0.0956905267 - - hypothetical protein POPTR_0009s08940g [Populus trichocarpa]
7 Hb_170761_010 0.095706536 - - PREDICTED: uncharacterized protein LOC105787794 [Gossypium raimondii]
8 Hb_000286_250 0.0958027308 desease resistance Gene Name: NB-ARC -
9 Hb_002200_010 0.0961024569 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
10 Hb_000057_030 0.0961926881 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_176138_010 0.096913541 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
12 Hb_006810_080 0.0969671841 - - hypothetical protein EUGRSUZ_C015472, partial [Eucalyptus grandis]
13 Hb_005436_020 0.0974478172 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_022693_100 0.0982011297 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
15 Hb_000866_480 0.098443388 - - -
16 Hb_011495_020 0.0991906256 - - Pectinesterase-2 precursor, putative [Ricinus communis]
17 Hb_009230_030 0.1012141834 - - -
18 Hb_002281_070 0.1020223256 - - hypothetical protein JCGZ_04352 [Jatropha curcas]
19 Hb_000329_410 0.1021482359 - - Beta-expansin 3 precursor, putative [Ricinus communis]
20 Hb_000526_130 0.1040510022 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]

Gene co-expression network

sample Hb_007769_010 Hb_007769_010 Hb_021931_030 Hb_021931_030 Hb_007769_010--Hb_021931_030 Hb_161981_020 Hb_161981_020 Hb_007769_010--Hb_161981_020 Hb_006124_010 Hb_006124_010 Hb_007769_010--Hb_006124_010 Hb_110822_020 Hb_110822_020 Hb_007769_010--Hb_110822_020 Hb_002081_250 Hb_002081_250 Hb_007769_010--Hb_002081_250 Hb_170761_010 Hb_170761_010 Hb_007769_010--Hb_170761_010 Hb_021931_030--Hb_161981_020 Hb_021931_030--Hb_006124_010 Hb_021931_030--Hb_110822_020 Hb_021931_030--Hb_002081_250 Hb_021931_030--Hb_170761_010 Hb_000286_250 Hb_000286_250 Hb_021931_030--Hb_000286_250 Hb_161981_020--Hb_006124_010 Hb_161981_020--Hb_110822_020 Hb_161981_020--Hb_002081_250 Hb_161981_020--Hb_170761_010 Hb_176138_010 Hb_176138_010 Hb_161981_020--Hb_176138_010 Hb_006124_010--Hb_176138_010 Hb_006810_080 Hb_006810_080 Hb_006124_010--Hb_006810_080 Hb_022693_100 Hb_022693_100 Hb_006124_010--Hb_022693_100 Hb_000866_480 Hb_000866_480 Hb_006124_010--Hb_000866_480 Hb_110822_020--Hb_002081_250 Hb_110822_020--Hb_170761_010 Hb_110822_020--Hb_000286_250 Hb_002200_010 Hb_002200_010 Hb_110822_020--Hb_002200_010 Hb_000057_030 Hb_000057_030 Hb_110822_020--Hb_000057_030 Hb_002081_250--Hb_170761_010 Hb_002081_250--Hb_000286_250 Hb_002081_250--Hb_002200_010 Hb_002081_250--Hb_000057_030 Hb_170761_010--Hb_000286_250 Hb_170761_010--Hb_002200_010 Hb_170761_010--Hb_000057_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0376681 7.34905 0 0 0 0.21205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 24.5556 0.326054

CAGE analysis