Hb_001101_030

Information

Type -
Description -
Location Contig1101: 55464-59696
Sequence    

Annotation

kegg
ID rcu:RCOM_0615560
description amino acid transporter, putative
nr
ID KDP47155.1
description hypothetical protein JCGZ_00046 [Jatropha curcas]
swissprot
ID Q9SX98
description Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1
trembl
ID A0A067LQE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00046 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lysine histidine transporter-like 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001101_030 0.0 - - hypothetical protein JCGZ_00046 [Jatropha curcas]
2 Hb_001045_050 0.1971551604 transcription factor TF Family: WRKY hypothetical protein POPTR_0001s33560g [Populus trichocarpa]
3 Hb_004855_050 0.2078963586 - - hypothetical protein POPTR_0016s12140g [Populus trichocarpa]
4 Hb_000256_100 0.2178491257 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
5 Hb_009230_040 0.2212820862 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000152_810 0.2238372226 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
7 Hb_002498_040 0.2249454592 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
8 Hb_002046_100 0.2254297524 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82 [Jatropha curcas]
9 Hb_001206_090 0.2316713572 - - pyruvate decarboxylase [Hevea brasiliensis]
10 Hb_000007_110 0.2324204504 - - PREDICTED: peroxidase 11 [Jatropha curcas]
11 Hb_000699_170 0.2334940805 - - myosin XI, putative [Ricinus communis]
12 Hb_008014_030 0.2356750124 - - Aquaporin NIP1.1, putative [Ricinus communis]
13 Hb_000025_510 0.2368640197 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
14 Hb_002057_010 0.2411947094 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
15 Hb_000140_160 0.2451147537 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
16 Hb_002376_030 0.2453158386 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000500_110 0.2477961329 - - Blue copper protein precursor, putative [Ricinus communis]
18 Hb_064885_050 0.2484315906 - - PREDICTED: BAHD acyltransferase At5g47980-like [Populus euphratica]
19 Hb_006478_180 0.249298403 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
20 Hb_001168_010 0.2497682748 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001101_030 Hb_001101_030 Hb_001045_050 Hb_001045_050 Hb_001101_030--Hb_001045_050 Hb_004855_050 Hb_004855_050 Hb_001101_030--Hb_004855_050 Hb_000256_100 Hb_000256_100 Hb_001101_030--Hb_000256_100 Hb_009230_040 Hb_009230_040 Hb_001101_030--Hb_009230_040 Hb_000152_810 Hb_000152_810 Hb_001101_030--Hb_000152_810 Hb_002498_040 Hb_002498_040 Hb_001101_030--Hb_002498_040 Hb_000140_160 Hb_000140_160 Hb_001045_050--Hb_000140_160 Hb_002006_140 Hb_002006_140 Hb_001045_050--Hb_002006_140 Hb_003435_060 Hb_003435_060 Hb_001045_050--Hb_003435_060 Hb_000500_110 Hb_000500_110 Hb_001045_050--Hb_000500_110 Hb_000597_110 Hb_000597_110 Hb_001045_050--Hb_000597_110 Hb_012553_020 Hb_012553_020 Hb_004855_050--Hb_012553_020 Hb_007875_070 Hb_007875_070 Hb_004855_050--Hb_007875_070 Hb_000984_080 Hb_000984_080 Hb_004855_050--Hb_000984_080 Hb_000976_020 Hb_000976_020 Hb_004855_050--Hb_000976_020 Hb_008225_080 Hb_008225_080 Hb_004855_050--Hb_008225_080 Hb_000189_260 Hb_000189_260 Hb_004855_050--Hb_000189_260 Hb_027445_090 Hb_027445_090 Hb_000256_100--Hb_027445_090 Hb_080225_010 Hb_080225_010 Hb_000256_100--Hb_080225_010 Hb_002057_010 Hb_002057_010 Hb_000256_100--Hb_002057_010 Hb_005000_040 Hb_005000_040 Hb_000256_100--Hb_005000_040 Hb_003057_080 Hb_003057_080 Hb_000256_100--Hb_003057_080 Hb_000617_340 Hb_000617_340 Hb_000256_100--Hb_000617_340 Hb_064885_050 Hb_064885_050 Hb_009230_040--Hb_064885_050 Hb_003581_240 Hb_003581_240 Hb_009230_040--Hb_003581_240 Hb_000813_120 Hb_000813_120 Hb_009230_040--Hb_000813_120 Hb_000118_010 Hb_000118_010 Hb_009230_040--Hb_000118_010 Hb_027288_010 Hb_027288_010 Hb_009230_040--Hb_027288_010 Hb_001173_050 Hb_001173_050 Hb_009230_040--Hb_001173_050 Hb_009545_010 Hb_009545_010 Hb_000152_810--Hb_009545_010 Hb_001504_220 Hb_001504_220 Hb_000152_810--Hb_001504_220 Hb_055305_010 Hb_055305_010 Hb_000152_810--Hb_055305_010 Hb_000152_810--Hb_004855_050 Hb_142332_010 Hb_142332_010 Hb_000152_810--Hb_142332_010 Hb_032631_050 Hb_032631_050 Hb_000152_810--Hb_032631_050 Hb_008097_020 Hb_008097_020 Hb_002498_040--Hb_008097_020 Hb_059379_020 Hb_059379_020 Hb_002498_040--Hb_059379_020 Hb_008145_010 Hb_008145_010 Hb_002498_040--Hb_008145_010 Hb_002027_310 Hb_002027_310 Hb_002498_040--Hb_002027_310 Hb_002498_040--Hb_009230_040 Hb_002498_040--Hb_004855_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0137187 0.218221 0.115109 0.0738852 0.0256956 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0983503 0.138582 1.2857 0

CAGE analysis