Hb_142332_010

Information

Type -
Description -
Location Contig142332: 1-156
Sequence    

Annotation

kegg
ID rcu:RCOM_0275340
description TRANSPARENT TESTA 12 protein, putative
nr
ID XP_002532229.1
description TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T1W0
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0275340 PE=3 SV=1
Gene Ontology
ID GO:0016021
description transparent testa 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_142332_010 0.0 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
2 Hb_001838_050 0.1207561437 - - hypothetical protein B456_007G218500 [Gossypium raimondii]
3 Hb_111582_010 0.1226181876 - - hypothetical protein POPTR_0303s002201g, partial [Populus trichocarpa]
4 Hb_002150_010 0.1252847541 - - hypothetical protein POPTR_0001s10240g [Populus trichocarpa]
5 Hb_001678_030 0.1329529612 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
6 Hb_001405_100 0.1333010866 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
7 Hb_000649_030 0.1363033911 - - scab resistance family protein [Populus trichocarpa]
8 Hb_055305_010 0.137117755 - - Disease resistance protein RFL1, putative [Ricinus communis]
9 Hb_000237_150 0.1437384485 - - Epoxide hydrolase 2 [Morus notabilis]
10 Hb_000616_050 0.1462430618 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
11 Hb_000852_050 0.1467566076 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
12 Hb_000029_370 0.1478298975 - - multidrug resistance pump, putative [Ricinus communis]
13 Hb_001135_290 0.1497930457 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
14 Hb_000238_060 0.1500207152 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
15 Hb_003119_070 0.1525708053 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
16 Hb_001221_480 0.1530912409 - - metal ion binding protein, putative [Ricinus communis]
17 Hb_032050_050 0.1547072487 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
18 Hb_002750_010 0.1552118976 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
19 Hb_003031_030 0.1576592645 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
20 Hb_002551_090 0.1583085606 - - hypothetical protein JCGZ_17224 [Jatropha curcas]

Gene co-expression network

sample Hb_142332_010 Hb_142332_010 Hb_001838_050 Hb_001838_050 Hb_142332_010--Hb_001838_050 Hb_111582_010 Hb_111582_010 Hb_142332_010--Hb_111582_010 Hb_002150_010 Hb_002150_010 Hb_142332_010--Hb_002150_010 Hb_001678_030 Hb_001678_030 Hb_142332_010--Hb_001678_030 Hb_001405_100 Hb_001405_100 Hb_142332_010--Hb_001405_100 Hb_000649_030 Hb_000649_030 Hb_142332_010--Hb_000649_030 Hb_004574_010 Hb_004574_010 Hb_001838_050--Hb_004574_010 Hb_003031_030 Hb_003031_030 Hb_001838_050--Hb_003031_030 Hb_000237_150 Hb_000237_150 Hb_001838_050--Hb_000237_150 Hb_088916_010 Hb_088916_010 Hb_001838_050--Hb_088916_010 Hb_000616_050 Hb_000616_050 Hb_001838_050--Hb_000616_050 Hb_001693_020 Hb_001693_020 Hb_001838_050--Hb_001693_020 Hb_111582_010--Hb_000649_030 Hb_001221_480 Hb_001221_480 Hb_111582_010--Hb_001221_480 Hb_003807_020 Hb_003807_020 Hb_111582_010--Hb_003807_020 Hb_009581_050 Hb_009581_050 Hb_111582_010--Hb_009581_050 Hb_000335_050 Hb_000335_050 Hb_111582_010--Hb_000335_050 Hb_010926_010 Hb_010926_010 Hb_111582_010--Hb_010926_010 Hb_002391_350 Hb_002391_350 Hb_002150_010--Hb_002391_350 Hb_002150_010--Hb_000237_150 Hb_000852_050 Hb_000852_050 Hb_002150_010--Hb_000852_050 Hb_032050_050 Hb_032050_050 Hb_002150_010--Hb_032050_050 Hb_002150_010--Hb_001838_050 Hb_002150_010--Hb_088916_010 Hb_001678_030--Hb_000616_050 Hb_001408_050 Hb_001408_050 Hb_001678_030--Hb_001408_050 Hb_000029_370 Hb_000029_370 Hb_001678_030--Hb_000029_370 Hb_001329_040 Hb_001329_040 Hb_001678_030--Hb_001329_040 Hb_001678_030--Hb_001838_050 Hb_001678_030--Hb_032050_050 Hb_000238_060 Hb_000238_060 Hb_001405_100--Hb_000238_060 Hb_001405_100--Hb_000237_150 Hb_002671_110 Hb_002671_110 Hb_001405_100--Hb_002671_110 Hb_006006_070 Hb_006006_070 Hb_001405_100--Hb_006006_070 Hb_001405_100--Hb_000852_050 Hb_001405_100--Hb_000649_030 Hb_000649_030--Hb_000237_150 Hb_022998_010 Hb_022998_010 Hb_000649_030--Hb_022998_010 Hb_000649_030--Hb_000238_060 Hb_000649_030--Hb_000616_050 Hb_019229_020 Hb_019229_020 Hb_000649_030--Hb_019229_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 500.24 92.8692 280.295 0 42.8815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 22.6031 18.7233 1199.64 53.3159

CAGE analysis