Hb_000331_280

Information

Type -
Description -
Location Contig331: 236803-241328
Sequence    

Annotation

kegg
ID rcu:RCOM_1506860
description AMP dependent CoA ligase, putative (EC:1.13.12.7)
nr
ID XP_002511221.1
description AMP dependent CoA ligase, putative [Ricinus communis]
swissprot
ID Q84P23
description 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2
trembl
ID B9RAJ6
description AMP dependent CoA ligase, putative OS=Ricinus communis GN=RCOM_1506860 PE=4 SV=1
Gene Ontology
ID GO:0003824
description 4-coumarate-- ligase-like 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34783: 237217-241321
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_280 0.0 - - AMP dependent CoA ligase, putative [Ricinus communis]
2 Hb_005694_010 0.1431878149 transcription factor TF Family: C2C2-Dof F-box family protein, putative isoform 1 [Theobroma cacao]
3 Hb_000732_080 0.1442025388 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g45440 [Jatropha curcas]
4 Hb_080451_010 0.1453179798 - - PREDICTED: ankyrin repeat-containing protein At2g01680 [Jatropha curcas]
5 Hb_005203_020 0.1705736379 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
6 Hb_003082_040 0.1712522193 - - PREDICTED: receptor-like protein kinase HSL1 [Phoenix dactylifera]
7 Hb_001278_040 0.1794973145 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
8 Hb_003640_020 0.180295739 - - pelota, putative [Ricinus communis]
9 Hb_004162_120 0.1809500218 - - PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Populus euphratica]
10 Hb_006185_010 0.1822656977 - - hypothetical protein L484_013453 [Morus notabilis]
11 Hb_000363_370 0.1848630593 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
12 Hb_003637_020 0.1881961068 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009193_110 0.1900237468 - - PREDICTED: wall-associated receptor kinase-like 1 isoform X1 [Jatropha curcas]
14 Hb_063716_090 0.1904768655 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006711_070 0.1915105997 - - hypothetical protein RCOM_1336320 [Ricinus communis]
16 Hb_138585_100 0.1922992531 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
17 Hb_103788_010 0.1929573297 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
18 Hb_030312_010 0.1937019384 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002027_380 0.1938217073 - - PREDICTED: secoisolariciresinol dehydrogenase isoform X2 [Jatropha curcas]
20 Hb_170674_010 0.1994266211 - - hypothetical protein JCGZ_23765 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_280 Hb_000331_280 Hb_005694_010 Hb_005694_010 Hb_000331_280--Hb_005694_010 Hb_000732_080 Hb_000732_080 Hb_000331_280--Hb_000732_080 Hb_080451_010 Hb_080451_010 Hb_000331_280--Hb_080451_010 Hb_005203_020 Hb_005203_020 Hb_000331_280--Hb_005203_020 Hb_003082_040 Hb_003082_040 Hb_000331_280--Hb_003082_040 Hb_001278_040 Hb_001278_040 Hb_000331_280--Hb_001278_040 Hb_003640_020 Hb_003640_020 Hb_005694_010--Hb_003640_020 Hb_027760_070 Hb_027760_070 Hb_005694_010--Hb_027760_070 Hb_000418_010 Hb_000418_010 Hb_005694_010--Hb_000418_010 Hb_000245_080 Hb_000245_080 Hb_005694_010--Hb_000245_080 Hb_000457_140 Hb_000457_140 Hb_005694_010--Hb_000457_140 Hb_103788_010 Hb_103788_010 Hb_000732_080--Hb_103788_010 Hb_089100_040 Hb_089100_040 Hb_000732_080--Hb_089100_040 Hb_004162_120 Hb_004162_120 Hb_000732_080--Hb_004162_120 Hb_006054_030 Hb_006054_030 Hb_000732_080--Hb_006054_030 Hb_000732_080--Hb_080451_010 Hb_005096_010 Hb_005096_010 Hb_000732_080--Hb_005096_010 Hb_080451_010--Hb_004162_120 Hb_012239_030 Hb_012239_030 Hb_080451_010--Hb_012239_030 Hb_000107_560 Hb_000107_560 Hb_080451_010--Hb_000107_560 Hb_065500_030 Hb_065500_030 Hb_080451_010--Hb_065500_030 Hb_000979_240 Hb_000979_240 Hb_080451_010--Hb_000979_240 Hb_001205_110 Hb_001205_110 Hb_080451_010--Hb_001205_110 Hb_001369_770 Hb_001369_770 Hb_005203_020--Hb_001369_770 Hb_127599_010 Hb_127599_010 Hb_005203_020--Hb_127599_010 Hb_000120_520 Hb_000120_520 Hb_005203_020--Hb_000120_520 Hb_000123_330 Hb_000123_330 Hb_005203_020--Hb_000123_330 Hb_000363_370 Hb_000363_370 Hb_005203_020--Hb_000363_370 Hb_012725_040 Hb_012725_040 Hb_005203_020--Hb_012725_040 Hb_002213_040 Hb_002213_040 Hb_003082_040--Hb_002213_040 Hb_001004_120 Hb_001004_120 Hb_003082_040--Hb_001004_120 Hb_002685_030 Hb_002685_030 Hb_003082_040--Hb_002685_030 Hb_030312_010 Hb_030312_010 Hb_003082_040--Hb_030312_010 Hb_003506_020 Hb_003506_020 Hb_003082_040--Hb_003506_020 Hb_000342_140 Hb_000342_140 Hb_003082_040--Hb_000342_140 Hb_001278_040--Hb_080451_010 Hb_029977_050 Hb_029977_050 Hb_001278_040--Hb_029977_050 Hb_001278_040--Hb_000457_140 Hb_001278_040--Hb_004162_120 Hb_011716_110 Hb_011716_110 Hb_001278_040--Hb_011716_110 Hb_003371_230 Hb_003371_230 Hb_001278_040--Hb_003371_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.25557 43.7899 6.25234 29.2747 14.1952 10.7869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.52677 3.50743 0.102294 11.2719 4.40796

CAGE analysis