Hb_000594_070

Information

Type transcription factor
Description TF Family: G2-like
Location Contig594: 124772-126925
Sequence    

Annotation

kegg
ID rcu:RCOM_0353920
description DNA binding protein, putative
nr
ID XP_002529155.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9FGT7
description Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2
trembl
ID B9ST36
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0353920 PE=4 SV=1
Gene Ontology
ID GO:0003677
description probable transcription factor glk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000594_070 0.0 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
2 Hb_003055_110 0.1052597509 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000189_170 0.1684547695 - - calcium ion binding protein, putative [Ricinus communis]
4 Hb_001300_170 0.1729220531 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010172_110 0.1851828044 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
6 Hb_027380_190 0.2021381353 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
7 Hb_002627_020 0.2029856041 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
8 Hb_001817_100 0.2066226059 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
9 Hb_002960_090 0.2083164914 - - protein with unknown function [Ricinus communis]
10 Hb_002701_160 0.2089404404 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
11 Hb_000270_180 0.2116842958 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
12 Hb_000189_130 0.2123823709 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
13 Hb_001998_200 0.2148252442 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
14 Hb_000310_120 0.2148356327 - - PREDICTED: probable transaldolase [Jatropha curcas]
15 Hb_001975_030 0.2149172717 - - 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase, partial [Plectranthus barbatus]
16 Hb_068194_010 0.2150831862 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
17 Hb_000510_080 0.21600704 - - hypothetical protein CICLE_v10021453mg [Citrus clementina]
18 Hb_002016_140 0.2162492307 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
19 Hb_001329_070 0.2166846951 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
20 Hb_001437_280 0.2184334561 - - AMP dependent CoA ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000594_070 Hb_000594_070 Hb_003055_110 Hb_003055_110 Hb_000594_070--Hb_003055_110 Hb_000189_170 Hb_000189_170 Hb_000594_070--Hb_000189_170 Hb_001300_170 Hb_001300_170 Hb_000594_070--Hb_001300_170 Hb_010172_110 Hb_010172_110 Hb_000594_070--Hb_010172_110 Hb_027380_190 Hb_027380_190 Hb_000594_070--Hb_027380_190 Hb_002627_020 Hb_002627_020 Hb_000594_070--Hb_002627_020 Hb_003055_110--Hb_000189_170 Hb_003055_110--Hb_010172_110 Hb_068194_010 Hb_068194_010 Hb_003055_110--Hb_068194_010 Hb_001437_280 Hb_001437_280 Hb_003055_110--Hb_001437_280 Hb_114310_100 Hb_114310_100 Hb_003055_110--Hb_114310_100 Hb_000189_170--Hb_010172_110 Hb_083940_010 Hb_083940_010 Hb_000189_170--Hb_083940_010 Hb_007002_040 Hb_007002_040 Hb_000189_170--Hb_007002_040 Hb_000189_170--Hb_114310_100 Hb_001221_330 Hb_001221_330 Hb_000189_170--Hb_001221_330 Hb_000005_340 Hb_000005_340 Hb_001300_170--Hb_000005_340 Hb_002701_160 Hb_002701_160 Hb_001300_170--Hb_002701_160 Hb_000984_260 Hb_000984_260 Hb_001300_170--Hb_000984_260 Hb_000092_120 Hb_000092_120 Hb_001300_170--Hb_000092_120 Hb_002960_090 Hb_002960_090 Hb_001300_170--Hb_002960_090 Hb_000331_350 Hb_000331_350 Hb_010172_110--Hb_000331_350 Hb_010172_110--Hb_007002_040 Hb_002811_280 Hb_002811_280 Hb_010172_110--Hb_002811_280 Hb_000310_120 Hb_000310_120 Hb_010172_110--Hb_000310_120 Hb_001329_070 Hb_001329_070 Hb_010172_110--Hb_001329_070 Hb_152868_030 Hb_152868_030 Hb_027380_190--Hb_152868_030 Hb_000172_280 Hb_000172_280 Hb_027380_190--Hb_000172_280 Hb_001817_100 Hb_001817_100 Hb_027380_190--Hb_001817_100 Hb_000465_150 Hb_000465_150 Hb_027380_190--Hb_000465_150 Hb_000907_150 Hb_000907_150 Hb_027380_190--Hb_000907_150 Hb_007590_090 Hb_007590_090 Hb_027380_190--Hb_007590_090 Hb_002627_020--Hb_002960_090 Hb_002627_020--Hb_000172_280 Hb_000175_470 Hb_000175_470 Hb_002627_020--Hb_000175_470 Hb_002627_020--Hb_027380_190 Hb_002627_020--Hb_000310_120 Hb_000648_050 Hb_000648_050 Hb_002627_020--Hb_000648_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.013574 0.155165 0.713028 0.286202 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.309205 0.291913 0.182876 0.456317 0.305459

CAGE analysis