Hb_000699_200

Information

Type -
Description -
Location Contig699: 187485-187718
Sequence    

Annotation

kegg
ID pop:POPTR_0019s02340g
description hypothetical protein
nr
ID XP_006370981.1
description hypothetical protein POPTR_0019s02340g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FE77
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s02340g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000699_200 0.0 - - hypothetical protein POPTR_0019s02340g [Populus trichocarpa]
2 Hb_000473_010 0.031310579 - - PREDICTED: galactolipase DONGLE, chloroplastic [Jatropha curcas]
3 Hb_003683_090 0.0507610186 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
4 Hb_002193_050 0.0810270426 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
5 Hb_000890_190 0.0865290596 - - glutaredoxin, grx, putative [Ricinus communis]
6 Hb_001511_130 0.0906404794 - - PREDICTED: taxadien-5-alpha-ol O-acetyltransferase [Jatropha curcas]
7 Hb_006124_040 0.1007192794 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
8 Hb_001403_070 0.1227377522 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
9 Hb_030312_060 0.1289400993 - - PREDICTED: uncharacterized protein LOC105634226 [Jatropha curcas]
10 Hb_005648_030 0.1299602612 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH18-like [Jatropha curcas]
11 Hb_002290_100 0.1312700199 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
12 Hb_022630_010 0.1348393363 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
13 Hb_001405_260 0.1386218119 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
14 Hb_078477_010 0.1395545501 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
15 Hb_007850_050 0.1409620173 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
16 Hb_110562_020 0.1458369766 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
17 Hb_000002_130 0.1461633225 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
18 Hb_000510_350 0.1473084811 - - Putative polyprotein [Oryza sativa Japonica Group]
19 Hb_044026_010 0.1476429817 - - PREDICTED: cytochrome P450 93A3-like [Jatropha curcas]
20 Hb_000172_730 0.1480813498 - - PREDICTED: cytochrome P450 CYP736A12-like [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000699_200 Hb_000699_200 Hb_000473_010 Hb_000473_010 Hb_000699_200--Hb_000473_010 Hb_003683_090 Hb_003683_090 Hb_000699_200--Hb_003683_090 Hb_002193_050 Hb_002193_050 Hb_000699_200--Hb_002193_050 Hb_000890_190 Hb_000890_190 Hb_000699_200--Hb_000890_190 Hb_001511_130 Hb_001511_130 Hb_000699_200--Hb_001511_130 Hb_006124_040 Hb_006124_040 Hb_000699_200--Hb_006124_040 Hb_000473_010--Hb_003683_090 Hb_000473_010--Hb_002193_050 Hb_000473_010--Hb_000890_190 Hb_002290_100 Hb_002290_100 Hb_000473_010--Hb_002290_100 Hb_000473_010--Hb_001511_130 Hb_003683_090--Hb_000890_190 Hb_003683_090--Hb_006124_040 Hb_003683_090--Hb_002193_050 Hb_000510_350 Hb_000510_350 Hb_003683_090--Hb_000510_350 Hb_022630_010 Hb_022630_010 Hb_002193_050--Hb_022630_010 Hb_005648_030 Hb_005648_030 Hb_002193_050--Hb_005648_030 Hb_002193_050--Hb_000890_190 Hb_000890_190--Hb_000510_350 Hb_168039_020 Hb_168039_020 Hb_000890_190--Hb_168039_020 Hb_030312_060 Hb_030312_060 Hb_001511_130--Hb_030312_060 Hb_030469_010 Hb_030469_010 Hb_001511_130--Hb_030469_010 Hb_007264_050 Hb_007264_050 Hb_001511_130--Hb_007264_050 Hb_000172_730 Hb_000172_730 Hb_001511_130--Hb_000172_730 Hb_006452_140 Hb_006452_140 Hb_006124_040--Hb_006452_140 Hb_006124_040--Hb_030312_060 Hb_002648_020 Hb_002648_020 Hb_006124_040--Hb_002648_020 Hb_001403_070 Hb_001403_070 Hb_006124_040--Hb_001403_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.6473 0.852536 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.585411 0

CAGE analysis