Hb_005162_140

Information

Type transcription factor
Description TF Family: GRAS
Location Contig5162: 96919-98826
Sequence    

Annotation

kegg
ID rcu:RCOM_1582830
description DELLA protein GAI, putative
nr
ID XP_012090206.1
description PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
swissprot
ID Q9FYR7
description Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1
trembl
ID A0A067JEL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26073 PE=4 SV=1
Gene Ontology
ID GO:0005737
description scarecrow-like protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46529: 96758-98538
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005162_140 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
2 Hb_009862_020 0.1346935634 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
3 Hb_001474_050 0.1352607229 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
4 Hb_012762_040 0.1540876838 - - big map kinase/bmk, putative [Ricinus communis]
5 Hb_001250_080 0.1546522349 - - PREDICTED: F-box/kelch-repeat protein At1g23390 [Jatropha curcas]
6 Hb_002343_010 0.1548502691 - - amino acid binding protein, putative [Ricinus communis]
7 Hb_003687_130 0.1565209536 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
8 Hb_000735_140 0.1578138213 - - 3-glucanase family protein [Populus trichocarpa]
9 Hb_003849_190 0.1599208548 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
10 Hb_000753_120 0.1627080631 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
11 Hb_001102_200 0.1636246918 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
12 Hb_003581_130 0.1656935744 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
13 Hb_009449_100 0.166445462 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
14 Hb_023344_110 0.1674919321 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
15 Hb_031089_050 0.1704143211 - - kinase, putative [Ricinus communis]
16 Hb_004574_040 0.1705878047 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
17 Hb_000028_430 0.1706100534 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
18 Hb_002391_320 0.1708454268 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
19 Hb_002835_280 0.1708994617 - - PREDICTED: L-type lectin-domain containing receptor kinase S.1 [Jatropha curcas]
20 Hb_005305_120 0.1716292935 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]

Gene co-expression network

sample Hb_005162_140 Hb_005162_140 Hb_009862_020 Hb_009862_020 Hb_005162_140--Hb_009862_020 Hb_001474_050 Hb_001474_050 Hb_005162_140--Hb_001474_050 Hb_012762_040 Hb_012762_040 Hb_005162_140--Hb_012762_040 Hb_001250_080 Hb_001250_080 Hb_005162_140--Hb_001250_080 Hb_002343_010 Hb_002343_010 Hb_005162_140--Hb_002343_010 Hb_003687_130 Hb_003687_130 Hb_005162_140--Hb_003687_130 Hb_000028_430 Hb_000028_430 Hb_009862_020--Hb_000028_430 Hb_000923_100 Hb_000923_100 Hb_009862_020--Hb_000923_100 Hb_003849_190 Hb_003849_190 Hb_009862_020--Hb_003849_190 Hb_005305_120 Hb_005305_120 Hb_009862_020--Hb_005305_120 Hb_008248_020 Hb_008248_020 Hb_009862_020--Hb_008248_020 Hb_001898_130 Hb_001898_130 Hb_001474_050--Hb_001898_130 Hb_005332_140 Hb_005332_140 Hb_001474_050--Hb_005332_140 Hb_000735_140 Hb_000735_140 Hb_001474_050--Hb_000735_140 Hb_001474_050--Hb_003849_190 Hb_001102_200 Hb_001102_200 Hb_001474_050--Hb_001102_200 Hb_143766_030 Hb_143766_030 Hb_001474_050--Hb_143766_030 Hb_000979_140 Hb_000979_140 Hb_012762_040--Hb_000979_140 Hb_001865_100 Hb_001865_100 Hb_012762_040--Hb_001865_100 Hb_000000_480 Hb_000000_480 Hb_012762_040--Hb_000000_480 Hb_001729_020 Hb_001729_020 Hb_012762_040--Hb_001729_020 Hb_000197_180 Hb_000197_180 Hb_012762_040--Hb_000197_180 Hb_000098_180 Hb_000098_180 Hb_012762_040--Hb_000098_180 Hb_001250_080--Hb_000028_430 Hb_004943_040 Hb_004943_040 Hb_001250_080--Hb_004943_040 Hb_002391_320 Hb_002391_320 Hb_001250_080--Hb_002391_320 Hb_000570_020 Hb_000570_020 Hb_001250_080--Hb_000570_020 Hb_000928_120 Hb_000928_120 Hb_001250_080--Hb_000928_120 Hb_000800_010 Hb_000800_010 Hb_001250_080--Hb_000800_010 Hb_001054_070 Hb_001054_070 Hb_002343_010--Hb_001054_070 Hb_002774_200 Hb_002774_200 Hb_002343_010--Hb_002774_200 Hb_002343_010--Hb_012762_040 Hb_001616_110 Hb_001616_110 Hb_002343_010--Hb_001616_110 Hb_001269_370 Hb_001269_370 Hb_002343_010--Hb_001269_370 Hb_121089_020 Hb_121089_020 Hb_002343_010--Hb_121089_020 Hb_000452_030 Hb_000452_030 Hb_003687_130--Hb_000452_030 Hb_003687_130--Hb_001865_100 Hb_000015_200 Hb_000015_200 Hb_003687_130--Hb_000015_200 Hb_001766_070 Hb_001766_070 Hb_003687_130--Hb_001766_070 Hb_000015_090 Hb_000015_090 Hb_003687_130--Hb_000015_090 Hb_003581_130 Hb_003581_130 Hb_003687_130--Hb_003581_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0056 40.3532 31.1809 47.5424 0.772531 1.38498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.99652 7.46607 16.7265 11.3431 38.7385

CAGE analysis