Hb_000032_510

Information

Type -
Description -
Location Contig32: 408491-411808
Sequence    

Annotation

kegg
ID rcu:RCOM_1692390
description hypothetical protein
nr
ID XP_012086694.1
description PREDICTED: SUN domain-containing protein 2 [Jatropha curcas]
swissprot
ID O59729
description Uncharacterized protein slp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC3E7.09 PE=3 SV=1
trembl
ID A0A067JZ58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20431 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33758: 404158-407769 , PASA_asmbl_33761: 409754-409976 , PASA_asmbl_33762: 410139-411667
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_510 0.0 - - PREDICTED: SUN domain-containing protein 2 [Jatropha curcas]
2 Hb_002835_280 0.1324710279 - - PREDICTED: L-type lectin-domain containing receptor kinase S.1 [Jatropha curcas]
3 Hb_005731_100 0.1364253265 - - monovalent cation:proton antiporter, putative [Ricinus communis]
4 Hb_005305_120 0.143352734 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
5 Hb_001124_140 0.1441068047 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
6 Hb_000227_280 0.1492455745 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
7 Hb_001433_150 0.1501755912 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000057_130 0.1508647957 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
9 Hb_005488_130 0.1531924348 - - transporter, putative [Ricinus communis]
10 Hb_002391_320 0.1533152966 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
11 Hb_000046_480 0.1547277466 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
12 Hb_006153_160 0.155387428 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X4 [Jatropha curcas]
13 Hb_000922_320 0.1565934829 - - hypothetical protein B456_001G071400 [Gossypium raimondii]
14 Hb_001153_100 0.1571752672 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
15 Hb_002759_220 0.1579717026 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
16 Hb_000140_060 0.158825582 - - 50S ribosomal protein L5, putative [Ricinus communis]
17 Hb_003226_200 0.1597822026 - - magnesium/proton exchanger, putative [Ricinus communis]
18 Hb_000923_100 0.1598310285 - - chloride channel clc, putative [Ricinus communis]
19 Hb_032568_010 0.1601628952 - - PREDICTED: protein phosphatase 2C 56-like [Jatropha curcas]
20 Hb_000028_430 0.1615912564 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000032_510 Hb_000032_510 Hb_002835_280 Hb_002835_280 Hb_000032_510--Hb_002835_280 Hb_005731_100 Hb_005731_100 Hb_000032_510--Hb_005731_100 Hb_005305_120 Hb_005305_120 Hb_000032_510--Hb_005305_120 Hb_001124_140 Hb_001124_140 Hb_000032_510--Hb_001124_140 Hb_000227_280 Hb_000227_280 Hb_000032_510--Hb_000227_280 Hb_001433_150 Hb_001433_150 Hb_000032_510--Hb_001433_150 Hb_002835_280--Hb_005305_120 Hb_001153_100 Hb_001153_100 Hb_002835_280--Hb_001153_100 Hb_001969_130 Hb_001969_130 Hb_002835_280--Hb_001969_130 Hb_000923_100 Hb_000923_100 Hb_002835_280--Hb_000923_100 Hb_002835_280--Hb_001124_140 Hb_005731_100--Hb_001124_140 Hb_022425_050 Hb_022425_050 Hb_005731_100--Hb_022425_050 Hb_000046_480 Hb_000046_480 Hb_005731_100--Hb_000046_480 Hb_005731_100--Hb_001153_100 Hb_000334_050 Hb_000334_050 Hb_005731_100--Hb_000334_050 Hb_001754_120 Hb_001754_120 Hb_005731_100--Hb_001754_120 Hb_000861_100 Hb_000861_100 Hb_005305_120--Hb_000861_100 Hb_005305_120--Hb_001124_140 Hb_002759_100 Hb_002759_100 Hb_005305_120--Hb_002759_100 Hb_009449_100 Hb_009449_100 Hb_005305_120--Hb_009449_100 Hb_005305_120--Hb_005731_100 Hb_001124_140--Hb_001969_130 Hb_001124_140--Hb_022425_050 Hb_002026_030 Hb_002026_030 Hb_001124_140--Hb_002026_030 Hb_001865_010 Hb_001865_010 Hb_001124_140--Hb_001865_010 Hb_004129_010 Hb_004129_010 Hb_001124_140--Hb_004129_010 Hb_005488_130 Hb_005488_130 Hb_000227_280--Hb_005488_130 Hb_007894_070 Hb_007894_070 Hb_000227_280--Hb_007894_070 Hb_003001_130 Hb_003001_130 Hb_000227_280--Hb_003001_130 Hb_000283_140 Hb_000283_140 Hb_000227_280--Hb_000283_140 Hb_000028_430 Hb_000028_430 Hb_000227_280--Hb_000028_430 Hb_004241_110 Hb_004241_110 Hb_000227_280--Hb_004241_110 Hb_001180_010 Hb_001180_010 Hb_001433_150--Hb_001180_010 Hb_002028_110 Hb_002028_110 Hb_001433_150--Hb_002028_110 Hb_001433_150--Hb_001153_100 Hb_002641_120 Hb_002641_120 Hb_001433_150--Hb_002641_120 Hb_001544_050 Hb_001544_050 Hb_001433_150--Hb_001544_050 Hb_002759_220 Hb_002759_220 Hb_001433_150--Hb_002759_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.153841 2.80612 3.61013 4.07819 0.028401 0.0725223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.31756 0.570188 0.852458 0.989644 4.27539

CAGE analysis