Hb_003371_060

Information

Type -
Description -
Location Contig3371: 20304-22546
Sequence    

Annotation

kegg
ID rcu:RCOM_1775070
description molybdopterin cofactor synthesis protein A, putative
nr
ID XP_011041994.1
description PREDICTED: cyclic pyranopterin monophosphate synthase, mitochondrial isoform X3 [Populus euphratica]
swissprot
ID Q39055
description Cyclic pyranopterin monophosphate synthase, mitochondrial OS=Arabidopsis thaliana GN=CNX2 PE=1 SV=1
trembl
ID A0A067J9F6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05265 PE=3 SV=1
Gene Ontology
ID GO:0019008
description cyclic pyranopterin monophosphate mitochondrial isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35281: 21736-21832
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_060 0.0 - - PREDICTED: cyclic pyranopterin monophosphate synthase, mitochondrial isoform X3 [Populus euphratica]
2 Hb_010968_010 0.1585034727 - - Golgi snare 12 isoform 1 [Theobroma cacao]
3 Hb_000556_150 0.1674011019 - - PREDICTED: fasciclin-like arabinogalactan protein 10 [Populus euphratica]
4 Hb_007594_030 0.1692044534 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
5 Hb_002026_140 0.1704665799 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
6 Hb_162378_010 0.1706344205 - - hypothetical protein JCGZ_20480 [Jatropha curcas]
7 Hb_005656_210 0.1708120443 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
8 Hb_140616_020 0.171367436 - - -
9 Hb_001310_110 0.1738611237 - - unnamed protein product [Coffea canephora]
10 Hb_000085_180 0.1740202866 - - PREDICTED: syntaxin-52-like isoform X1 [Jatropha curcas]
11 Hb_003018_060 0.1740611917 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
12 Hb_102291_010 0.1743464704 - - PREDICTED: histone chaperone ASF1B [Populus euphratica]
13 Hb_098315_070 0.1756949421 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105636030 isoform X1 [Jatropha curcas]
14 Hb_002639_150 0.1780503476 - - -
15 Hb_025669_020 0.1780628218 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000297_110 0.1795497223 - - PREDICTED: uncharacterized protein LOC105634718 [Jatropha curcas]
17 Hb_003683_050 0.1800553311 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
18 Hb_000347_540 0.1829204409 - - protein binding protein, putative [Ricinus communis]
19 Hb_121937_010 0.1829388642 - - hypothetical protein B456_013G261900 [Gossypium raimondii]
20 Hb_002749_090 0.1840732301 - - -

Gene co-expression network

sample Hb_003371_060 Hb_003371_060 Hb_010968_010 Hb_010968_010 Hb_003371_060--Hb_010968_010 Hb_000556_150 Hb_000556_150 Hb_003371_060--Hb_000556_150 Hb_007594_030 Hb_007594_030 Hb_003371_060--Hb_007594_030 Hb_002026_140 Hb_002026_140 Hb_003371_060--Hb_002026_140 Hb_162378_010 Hb_162378_010 Hb_003371_060--Hb_162378_010 Hb_005656_210 Hb_005656_210 Hb_003371_060--Hb_005656_210 Hb_000676_050 Hb_000676_050 Hb_010968_010--Hb_000676_050 Hb_000205_120 Hb_000205_120 Hb_010968_010--Hb_000205_120 Hb_002292_010 Hb_002292_010 Hb_010968_010--Hb_002292_010 Hb_001504_150 Hb_001504_150 Hb_010968_010--Hb_001504_150 Hb_002784_050 Hb_002784_050 Hb_010968_010--Hb_002784_050 Hb_000920_280 Hb_000920_280 Hb_010968_010--Hb_000920_280 Hb_000392_370 Hb_000392_370 Hb_000556_150--Hb_000392_370 Hb_005463_130 Hb_005463_130 Hb_000556_150--Hb_005463_130 Hb_086022_010 Hb_086022_010 Hb_000556_150--Hb_086022_010 Hb_007919_080 Hb_007919_080 Hb_000556_150--Hb_007919_080 Hb_001501_080 Hb_001501_080 Hb_000556_150--Hb_001501_080 Hb_007904_210 Hb_007904_210 Hb_000556_150--Hb_007904_210 Hb_007951_060 Hb_007951_060 Hb_007594_030--Hb_007951_060 Hb_033843_010 Hb_033843_010 Hb_007594_030--Hb_033843_010 Hb_000451_010 Hb_000451_010 Hb_007594_030--Hb_000451_010 Hb_000327_120 Hb_000327_120 Hb_007594_030--Hb_000327_120 Hb_001439_150 Hb_001439_150 Hb_007594_030--Hb_001439_150 Hb_002506_020 Hb_002506_020 Hb_007594_030--Hb_002506_020 Hb_000359_330 Hb_000359_330 Hb_002026_140--Hb_000359_330 Hb_002639_150 Hb_002639_150 Hb_002026_140--Hb_002639_150 Hb_002026_140--Hb_002292_010 Hb_002157_260 Hb_002157_260 Hb_002026_140--Hb_002157_260 Hb_000261_250 Hb_000261_250 Hb_002026_140--Hb_000261_250 Hb_003142_070 Hb_003142_070 Hb_002026_140--Hb_003142_070 Hb_003858_040 Hb_003858_040 Hb_162378_010--Hb_003858_040 Hb_000002_490 Hb_000002_490 Hb_162378_010--Hb_000002_490 Hb_001050_010 Hb_001050_010 Hb_162378_010--Hb_001050_010 Hb_162378_010--Hb_000556_150 Hb_000480_010 Hb_000480_010 Hb_162378_010--Hb_000480_010 Hb_162378_010--Hb_000392_370 Hb_006623_020 Hb_006623_020 Hb_005656_210--Hb_006623_020 Hb_003018_060 Hb_003018_060 Hb_005656_210--Hb_003018_060 Hb_001329_130 Hb_001329_130 Hb_005656_210--Hb_001329_130 Hb_001983_030 Hb_001983_030 Hb_005656_210--Hb_001983_030 Hb_005656_210--Hb_010968_010 Hb_000808_250 Hb_000808_250 Hb_005656_210--Hb_000808_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.58784 0.802343 2.10261 2.24606 3.16409 1.20358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.22415 1.52737 1.60319 0.212951 0.205762

CAGE analysis