Hb_000424_090

Information

Type -
Description -
Location Contig424: 121644-124753
Sequence    

Annotation

kegg
ID pop:POPTR_0018s08450g
description POPTRDRAFT_260493; hypothetical protein
nr
ID XP_012077184.1
description PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
swissprot
ID Q84RK2
description Fatty-acid-binding protein 2 OS=Arabidopsis thaliana GN=FAP2 PE=2 SV=2
trembl
ID A0A067KG72
description Chalcone-flavonone isomerase family protein OS=Jatropha curcas GN=JCGZ_07589 PE=3 SV=1
Gene Ontology
ID GO:0016872
description fatty-acid-binding protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41912: 121785-122327 , PASA_asmbl_41913: 123217-123477
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000424_090 0.0 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
2 Hb_000139_120 0.2028198552 - - sugar transporter, putative [Ricinus communis]
3 Hb_010931_060 0.2407171288 - - hypothetical protein JCGZ_03001 [Jatropha curcas]
4 Hb_000365_170 0.2543938608 - - PREDICTED: 50S ribosomal protein L17, chloroplastic isoform X3 [Jatropha curcas]
5 Hb_005618_060 0.2606003643 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
6 Hb_007765_070 0.2632554944 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
7 Hb_008994_010 0.2678383465 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
8 Hb_000694_030 0.2702023882 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
9 Hb_006816_330 0.2715905069 - - exonuclease, putative [Ricinus communis]
10 Hb_014320_010 0.2722617107 - - PREDICTED: uncharacterized protein LOC105629932 [Jatropha curcas]
11 Hb_000603_270 0.2822619797 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
12 Hb_000866_340 0.2846033541 - - DNA binding protein, putative [Ricinus communis]
13 Hb_115031_030 0.2847998002 - - ribosomal protein S12 (chloroplast) [Camellia sinensis]
14 Hb_002475_120 0.285732579 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
15 Hb_004221_030 0.2886270056 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
16 Hb_000340_410 0.2888012128 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
17 Hb_002030_120 0.2897964033 - - -
18 Hb_000138_050 0.2925591785 transcription factor TF Family: HB Homeobox-leucine zipper protein HAT14, putative [Ricinus communis]
19 Hb_001135_110 0.2929041615 - - -
20 Hb_002151_010 0.2951404008 - - hypothetical protein POPTR_0006s14610g [Populus trichocarpa]

Gene co-expression network

sample Hb_000424_090 Hb_000424_090 Hb_000139_120 Hb_000139_120 Hb_000424_090--Hb_000139_120 Hb_010931_060 Hb_010931_060 Hb_000424_090--Hb_010931_060 Hb_000365_170 Hb_000365_170 Hb_000424_090--Hb_000365_170 Hb_005618_060 Hb_005618_060 Hb_000424_090--Hb_005618_060 Hb_007765_070 Hb_007765_070 Hb_000424_090--Hb_007765_070 Hb_008994_010 Hb_008994_010 Hb_000424_090--Hb_008994_010 Hb_017387_030 Hb_017387_030 Hb_000139_120--Hb_017387_030 Hb_000139_120--Hb_005618_060 Hb_000245_160 Hb_000245_160 Hb_000139_120--Hb_000245_160 Hb_027402_030 Hb_027402_030 Hb_000139_120--Hb_027402_030 Hb_000139_120--Hb_010931_060 Hb_006816_330 Hb_006816_330 Hb_010931_060--Hb_006816_330 Hb_066967_020 Hb_066967_020 Hb_010931_060--Hb_066967_020 Hb_002105_010 Hb_002105_010 Hb_010931_060--Hb_002105_010 Hb_000694_030 Hb_000694_030 Hb_010931_060--Hb_000694_030 Hb_004994_320 Hb_004994_320 Hb_010931_060--Hb_004994_320 Hb_074792_010 Hb_074792_010 Hb_000365_170--Hb_074792_010 Hb_000816_210 Hb_000816_210 Hb_000365_170--Hb_000816_210 Hb_131317_010 Hb_131317_010 Hb_000365_170--Hb_131317_010 Hb_000638_260 Hb_000638_260 Hb_000365_170--Hb_000638_260 Hb_000300_710 Hb_000300_710 Hb_000365_170--Hb_000300_710 Hb_003430_040 Hb_003430_040 Hb_000365_170--Hb_003430_040 Hb_000979_010 Hb_000979_010 Hb_005618_060--Hb_000979_010 Hb_001367_010 Hb_001367_010 Hb_005618_060--Hb_001367_010 Hb_002570_010 Hb_002570_010 Hb_005618_060--Hb_002570_010 Hb_005618_060--Hb_007765_070 Hb_091761_010 Hb_091761_010 Hb_005618_060--Hb_091761_010 Hb_008511_060 Hb_008511_060 Hb_007765_070--Hb_008511_060 Hb_000270_870 Hb_000270_870 Hb_007765_070--Hb_000270_870 Hb_004724_470 Hb_004724_470 Hb_007765_070--Hb_004724_470 Hb_048476_150 Hb_048476_150 Hb_007765_070--Hb_048476_150 Hb_024836_010 Hb_024836_010 Hb_007765_070--Hb_024836_010 Hb_002471_180 Hb_002471_180 Hb_007765_070--Hb_002471_180 Hb_000739_270 Hb_000739_270 Hb_008994_010--Hb_000739_270 Hb_036790_030 Hb_036790_030 Hb_008994_010--Hb_036790_030 Hb_008994_010--Hb_000638_260 Hb_000321_080 Hb_000321_080 Hb_008994_010--Hb_000321_080 Hb_010998_050 Hb_010998_050 Hb_008994_010--Hb_010998_050 Hb_000345_410 Hb_000345_410 Hb_008994_010--Hb_000345_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.18182 0 0.63896 0.257649 0.0858396 0.353721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0396223 0.031168 0 0.012481 0.129148

CAGE analysis