Hb_000365_170

Information

Type -
Description -
Location Contig365: 174544-179185
Sequence    

Annotation

kegg
ID rcu:RCOM_1323290
description ribosomal protein L17, putative
nr
ID XP_012090967.1
description PREDICTED: 50S ribosomal protein L17, chloroplastic isoform X3 [Jatropha curcas]
swissprot
ID Q9M385
description 50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana GN=RPL17 PE=2 SV=1
trembl
ID A0A067JGB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00605 PE=3 SV=1
Gene Ontology
ID GO:0009570
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37568: 175212-175517
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_170 0.0 - - PREDICTED: 50S ribosomal protein L17, chloroplastic isoform X3 [Jatropha curcas]
2 Hb_074792_010 0.1907329554 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
3 Hb_000816_210 0.1975687442 - - PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Jatropha curcas]
4 Hb_131317_010 0.2011546377 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
5 Hb_000638_260 0.2114436246 - - hypothetical protein JCGZ_06730 [Jatropha curcas]
6 Hb_000300_710 0.2201727123 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
7 Hb_003430_040 0.2233903608 - - spermidine synthase 1, putative [Ricinus communis]
8 Hb_002067_010 0.2311128824 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008994_010 0.2359033209 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
10 Hb_000739_270 0.2386522457 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
11 Hb_073973_030 0.2390407534 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
12 Hb_000694_030 0.2405754626 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
13 Hb_002960_110 0.2426829326 - - PREDICTED: synaptotagmin-2 isoform X1 [Jatropha curcas]
14 Hb_000424_070 0.2428193993 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
15 Hb_006618_070 0.2463492303 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
16 Hb_003874_010 0.2469023028 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
17 Hb_000347_140 0.2481997764 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_004957_020 0.2503295655 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000640_050 0.2513937761 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
20 Hb_004221_030 0.2527980163 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000365_170 Hb_000365_170 Hb_074792_010 Hb_074792_010 Hb_000365_170--Hb_074792_010 Hb_000816_210 Hb_000816_210 Hb_000365_170--Hb_000816_210 Hb_131317_010 Hb_131317_010 Hb_000365_170--Hb_131317_010 Hb_000638_260 Hb_000638_260 Hb_000365_170--Hb_000638_260 Hb_000300_710 Hb_000300_710 Hb_000365_170--Hb_000300_710 Hb_003430_040 Hb_003430_040 Hb_000365_170--Hb_003430_040 Hb_074792_010--Hb_003430_040 Hb_074792_010--Hb_000300_710 Hb_000347_140 Hb_000347_140 Hb_074792_010--Hb_000347_140 Hb_000732_030 Hb_000732_030 Hb_074792_010--Hb_000732_030 Hb_074792_010--Hb_000638_260 Hb_003874_010 Hb_003874_010 Hb_074792_010--Hb_003874_010 Hb_000207_140 Hb_000207_140 Hb_000816_210--Hb_000207_140 Hb_002435_090 Hb_002435_090 Hb_000816_210--Hb_002435_090 Hb_001975_050 Hb_001975_050 Hb_000816_210--Hb_001975_050 Hb_000438_130 Hb_000438_130 Hb_000816_210--Hb_000438_130 Hb_188739_010 Hb_188739_010 Hb_000816_210--Hb_188739_010 Hb_000816_210--Hb_003430_040 Hb_002048_030 Hb_002048_030 Hb_131317_010--Hb_002048_030 Hb_000243_090 Hb_000243_090 Hb_131317_010--Hb_000243_090 Hb_002596_030 Hb_002596_030 Hb_131317_010--Hb_002596_030 Hb_007229_030 Hb_007229_030 Hb_131317_010--Hb_007229_030 Hb_154114_030 Hb_154114_030 Hb_131317_010--Hb_154114_030 Hb_000638_260--Hb_000347_140 Hb_028487_120 Hb_028487_120 Hb_000638_260--Hb_028487_120 Hb_000345_410 Hb_000345_410 Hb_000638_260--Hb_000345_410 Hb_008406_100 Hb_008406_100 Hb_000638_260--Hb_008406_100 Hb_000638_260--Hb_003430_040 Hb_000300_710--Hb_000347_140 Hb_000300_710--Hb_003874_010 Hb_000300_710--Hb_003430_040 Hb_000300_710--Hb_188739_010 Hb_000424_070 Hb_000424_070 Hb_000300_710--Hb_000424_070 Hb_003430_040--Hb_000347_140 Hb_003430_040--Hb_003874_010 Hb_003430_040--Hb_000732_030 Hb_000032_200 Hb_000032_200 Hb_003430_040--Hb_000032_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.500621 0.249076 5.76957 0.537148 0.77274 1.73798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.559744 0.396181 0.0805793 0.195125 0.53709

CAGE analysis