Hb_131317_010

Information

Type -
Description -
Location Contig131317: 479-1589
Sequence    

Annotation

kegg
ID rcu:RCOM_1298940
description hypothetical protein
nr
ID XP_012078848.1
description PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
swissprot
ID Q9Y365
description PCTP-like protein OS=Homo sapiens GN=STARD10 PE=1 SV=2
trembl
ID A0A067KBP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13373 PE=4 SV=1
Gene Ontology
ID GO:0008289
description pctp-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_131317_010 0.0 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
2 Hb_000365_170 0.2011546377 - - PREDICTED: 50S ribosomal protein L17, chloroplastic isoform X3 [Jatropha curcas]
3 Hb_002048_030 0.2431159407 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
4 Hb_000243_090 0.2564197123 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
5 Hb_002596_030 0.2640588188 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
6 Hb_007229_030 0.2640608486 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Jatropha curcas]
7 Hb_154114_030 0.2676413259 - - amino acid binding protein, putative [Ricinus communis]
8 Hb_002960_110 0.2716357706 - - PREDICTED: synaptotagmin-2 isoform X1 [Jatropha curcas]
9 Hb_012586_050 0.2752316749 - - PREDICTED: triosephosphate isomerase, cytosolic [Prunus mume]
10 Hb_008994_010 0.2790252922 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
11 Hb_004668_110 0.280451055 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000694_030 0.2847752492 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
13 Hb_000424_070 0.2879112394 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
14 Hb_000010_130 0.2896204904 - - PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic [Pyrus x bretschneideri]
15 Hb_004176_060 0.2902533549 - - -
16 Hb_036790_030 0.2913188601 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
17 Hb_001301_330 0.2961478567 - - OTU-like cysteine protease family protein [Populus trichocarpa]
18 Hb_001507_080 0.2975731979 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
19 Hb_074792_010 0.2985482139 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
20 Hb_003494_010 0.2986190002 - - hypothetical protein JCGZ_19838 [Jatropha curcas]

Gene co-expression network

sample Hb_131317_010 Hb_131317_010 Hb_000365_170 Hb_000365_170 Hb_131317_010--Hb_000365_170 Hb_002048_030 Hb_002048_030 Hb_131317_010--Hb_002048_030 Hb_000243_090 Hb_000243_090 Hb_131317_010--Hb_000243_090 Hb_002596_030 Hb_002596_030 Hb_131317_010--Hb_002596_030 Hb_007229_030 Hb_007229_030 Hb_131317_010--Hb_007229_030 Hb_154114_030 Hb_154114_030 Hb_131317_010--Hb_154114_030 Hb_074792_010 Hb_074792_010 Hb_000365_170--Hb_074792_010 Hb_000816_210 Hb_000816_210 Hb_000365_170--Hb_000816_210 Hb_000638_260 Hb_000638_260 Hb_000365_170--Hb_000638_260 Hb_000300_710 Hb_000300_710 Hb_000365_170--Hb_000300_710 Hb_003430_040 Hb_003430_040 Hb_000365_170--Hb_003430_040 Hb_007894_210 Hb_007894_210 Hb_002048_030--Hb_007894_210 Hb_001623_100 Hb_001623_100 Hb_002048_030--Hb_001623_100 Hb_000123_140 Hb_000123_140 Hb_002048_030--Hb_000123_140 Hb_143766_020 Hb_143766_020 Hb_002048_030--Hb_143766_020 Hb_010367_030 Hb_010367_030 Hb_002048_030--Hb_010367_030 Hb_015292_040 Hb_015292_040 Hb_002048_030--Hb_015292_040 Hb_011639_080 Hb_011639_080 Hb_000243_090--Hb_011639_080 Hb_007416_370 Hb_007416_370 Hb_000243_090--Hb_007416_370 Hb_098315_070 Hb_098315_070 Hb_000243_090--Hb_098315_070 Hb_149838_010 Hb_149838_010 Hb_000243_090--Hb_149838_010 Hb_007456_010 Hb_007456_010 Hb_000243_090--Hb_007456_010 Hb_000265_220 Hb_000265_220 Hb_000243_090--Hb_000265_220 Hb_002701_120 Hb_002701_120 Hb_002596_030--Hb_002701_120 Hb_000390_310 Hb_000390_310 Hb_002596_030--Hb_000390_310 Hb_005276_130 Hb_005276_130 Hb_002596_030--Hb_005276_130 Hb_005527_010 Hb_005527_010 Hb_002596_030--Hb_005527_010 Hb_000175_590 Hb_000175_590 Hb_002596_030--Hb_000175_590 Hb_000694_030 Hb_000694_030 Hb_002596_030--Hb_000694_030 Hb_000010_130 Hb_000010_130 Hb_007229_030--Hb_000010_130 Hb_001352_080 Hb_001352_080 Hb_007229_030--Hb_001352_080 Hb_000424_070 Hb_000424_070 Hb_007229_030--Hb_000424_070 Hb_002960_110 Hb_002960_110 Hb_007229_030--Hb_002960_110 Hb_001959_240 Hb_001959_240 Hb_007229_030--Hb_001959_240 Hb_002498_170 Hb_002498_170 Hb_007229_030--Hb_002498_170 Hb_003449_060 Hb_003449_060 Hb_154114_030--Hb_003449_060 Hb_002475_120 Hb_002475_120 Hb_154114_030--Hb_002475_120 Hb_001269_310 Hb_001269_310 Hb_154114_030--Hb_001269_310 Hb_012586_050 Hb_012586_050 Hb_154114_030--Hb_012586_050 Hb_004907_090 Hb_004907_090 Hb_154114_030--Hb_004907_090 Hb_002151_010 Hb_002151_010 Hb_154114_030--Hb_002151_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.1543 1.31062 86.232 13.1405 40.2449 24.4076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.68394 9.53388 0.803231 0.733598 9.40703

CAGE analysis