Hb_005940_040

Information

Type -
Description -
Location Contig5940: 50825-61272
Sequence    

Annotation

kegg
ID rcu:RCOM_0851830
description Auxin-induced protein 5NG4, putative
nr
ID XP_002517375.1
description Auxin-induced protein 5NG4, putative [Ricinus communis]
swissprot
ID Q94JU2
description WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1
trembl
ID B9RUD0
description Auxin-induced protein 5NG4, putative OS=Ricinus communis GN=RCOM_0851830 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at3g28050-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005940_040 0.0 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
2 Hb_000215_120 0.1385399247 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
3 Hb_000016_290 0.1425273487 - - multidrug resistance pump, putative [Ricinus communis]
4 Hb_059580_010 0.1442205968 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
5 Hb_018609_010 0.1445252986 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004059_010 0.1546245334 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
7 Hb_001796_010 0.1549241924 - - purine transporter, putative [Ricinus communis]
8 Hb_005163_010 0.1582623005 - - PREDICTED: probable terpene synthase 11 [Jatropha curcas]
9 Hb_001277_150 0.1598293249 - - hypothetical protein VITISV_043492 [Vitis vinifera]
10 Hb_186671_020 0.1644488526 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_005687_020 0.1667860545 - - P66 protein [Hevea brasiliensis]
12 Hb_007264_050 0.1670609799 - - -
13 Hb_000563_370 0.1710403209 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
14 Hb_007328_020 0.1710890022 - - -
15 Hb_000215_380 0.1711805294 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
16 Hb_064583_010 0.1715343988 - - PREDICTED: germin-like protein subfamily 1 member 7 [Vitis vinifera]
17 Hb_044724_020 0.1723144817 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Fragaria vesca subsp. vesca]
18 Hb_099085_010 0.1736428624 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
19 Hb_106595_010 0.1742633321 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
20 Hb_004096_040 0.1754031166 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_005940_040 Hb_005940_040 Hb_000215_120 Hb_000215_120 Hb_005940_040--Hb_000215_120 Hb_000016_290 Hb_000016_290 Hb_005940_040--Hb_000016_290 Hb_059580_010 Hb_059580_010 Hb_005940_040--Hb_059580_010 Hb_018609_010 Hb_018609_010 Hb_005940_040--Hb_018609_010 Hb_004059_010 Hb_004059_010 Hb_005940_040--Hb_004059_010 Hb_001796_010 Hb_001796_010 Hb_005940_040--Hb_001796_010 Hb_000215_120--Hb_004059_010 Hb_000215_120--Hb_000016_290 Hb_000215_120--Hb_001796_010 Hb_186671_020 Hb_186671_020 Hb_000215_120--Hb_186671_020 Hb_005687_020 Hb_005687_020 Hb_000215_120--Hb_005687_020 Hb_000215_120--Hb_018609_010 Hb_007264_050 Hb_007264_050 Hb_000016_290--Hb_007264_050 Hb_009740_010 Hb_009740_010 Hb_000016_290--Hb_009740_010 Hb_001766_090 Hb_001766_090 Hb_000016_290--Hb_001766_090 Hb_106595_010 Hb_106595_010 Hb_000016_290--Hb_106595_010 Hb_044724_020 Hb_044724_020 Hb_000016_290--Hb_044724_020 Hb_001277_150 Hb_001277_150 Hb_059580_010--Hb_001277_150 Hb_059580_010--Hb_000215_120 Hb_002760_060 Hb_002760_060 Hb_059580_010--Hb_002760_060 Hb_001985_010 Hb_001985_010 Hb_059580_010--Hb_001985_010 Hb_059580_010--Hb_018609_010 Hb_018609_010--Hb_001796_010 Hb_018609_010--Hb_186671_020 Hb_005050_010 Hb_005050_010 Hb_018609_010--Hb_005050_010 Hb_099085_010 Hb_099085_010 Hb_018609_010--Hb_099085_010 Hb_000979_270 Hb_000979_270 Hb_018609_010--Hb_000979_270 Hb_064583_010 Hb_064583_010 Hb_018609_010--Hb_064583_010 Hb_010368_040 Hb_010368_040 Hb_004059_010--Hb_010368_040 Hb_004059_010--Hb_001796_010 Hb_001190_020 Hb_001190_020 Hb_004059_010--Hb_001190_020 Hb_000879_100 Hb_000879_100 Hb_004059_010--Hb_000879_100 Hb_006519_010 Hb_006519_010 Hb_004059_010--Hb_006519_010 Hb_001796_010--Hb_186671_020 Hb_001796_010--Hb_099085_010 Hb_001796_010--Hb_064583_010 Hb_011980_020 Hb_011980_020 Hb_001796_010--Hb_011980_020 Hb_163950_060 Hb_163950_060 Hb_001796_010--Hb_163950_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.27979 0 0.0868323 0.0469053 0.0286446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.165004 0.12739 0

CAGE analysis