Hb_007163_140

Information

Type transcription factor
Description TF Family: bHLH
Location Contig7163: 208610-210100
Sequence    

Annotation

kegg
ID rcu:RCOM_0188790
description DNA binding protein, putative (EC:1.3.1.74)
nr
ID KDP32145.1
description hypothetical protein JCGZ_12606 [Jatropha curcas]
swissprot
ID Q9T072
description Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2
trembl
ID A0A067KIQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12606 PE=4 SV=1
Gene Ontology
ID GO:0032440
description transcription factor bhlh18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007163_140 0.0 transcription factor TF Family: bHLH hypothetical protein JCGZ_12606 [Jatropha curcas]
2 Hb_020581_030 0.1346619487 - - -
3 Hb_004041_080 0.2094769226 - - PREDICTED: uncharacterized protein LOC105639186 [Jatropha curcas]
4 Hb_005380_040 0.2189231967 - - hypothetical protein PRUPE_ppa015877mg, partial [Prunus persica]
5 Hb_011861_110 0.2200411813 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
6 Hb_101089_010 0.2264623044 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
7 Hb_003175_020 0.2294988331 - - homeobox protein knotted-1, putative [Ricinus communis]
8 Hb_000792_060 0.2351854797 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002461_080 0.2421416083 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
10 Hb_085327_010 0.2443741904 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
11 Hb_133636_010 0.2550685292 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
12 Hb_033006_040 0.2575684388 - - sulfate transporter, putative [Ricinus communis]
13 Hb_000862_020 0.2651131437 - - PREDICTED: cytochrome P450 87A3 [Jatropha curcas]
14 Hb_000088_160 0.2657273791 - - PREDICTED: uncharacterized protein LOC105629775 [Jatropha curcas]
15 Hb_046117_040 0.268957436 - - hypothetical protein JCGZ_07941 [Jatropha curcas]
16 Hb_001454_340 0.2693814296 - - ATDI21 [Manihot esculenta]
17 Hb_164010_090 0.2704331786 - - cellulose synthase, putative [Ricinus communis]
18 Hb_002774_130 0.2711239481 - - -
19 Hb_001373_080 0.2760639018 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
20 Hb_000565_010 0.2760848614 - - hypothetical protein JCGZ_03337 [Jatropha curcas]

Gene co-expression network

sample Hb_007163_140 Hb_007163_140 Hb_020581_030 Hb_020581_030 Hb_007163_140--Hb_020581_030 Hb_004041_080 Hb_004041_080 Hb_007163_140--Hb_004041_080 Hb_005380_040 Hb_005380_040 Hb_007163_140--Hb_005380_040 Hb_011861_110 Hb_011861_110 Hb_007163_140--Hb_011861_110 Hb_101089_010 Hb_101089_010 Hb_007163_140--Hb_101089_010 Hb_003175_020 Hb_003175_020 Hb_007163_140--Hb_003175_020 Hb_020581_030--Hb_004041_080 Hb_000565_010 Hb_000565_010 Hb_020581_030--Hb_000565_010 Hb_085327_010 Hb_085327_010 Hb_020581_030--Hb_085327_010 Hb_001454_340 Hb_001454_340 Hb_020581_030--Hb_001454_340 Hb_001687_050 Hb_001687_050 Hb_020581_030--Hb_001687_050 Hb_004041_080--Hb_085327_010 Hb_005663_050 Hb_005663_050 Hb_004041_080--Hb_005663_050 Hb_000334_250 Hb_000334_250 Hb_004041_080--Hb_000334_250 Hb_004041_080--Hb_001454_340 Hb_009515_010 Hb_009515_010 Hb_004041_080--Hb_009515_010 Hb_004724_070 Hb_004724_070 Hb_005380_040--Hb_004724_070 Hb_164010_090 Hb_164010_090 Hb_005380_040--Hb_164010_090 Hb_004341_010 Hb_004341_010 Hb_005380_040--Hb_004341_010 Hb_028207_030 Hb_028207_030 Hb_005380_040--Hb_028207_030 Hb_000045_180 Hb_000045_180 Hb_005380_040--Hb_000045_180 Hb_004837_170 Hb_004837_170 Hb_005380_040--Hb_004837_170 Hb_002461_080 Hb_002461_080 Hb_011861_110--Hb_002461_080 Hb_010921_090 Hb_010921_090 Hb_011861_110--Hb_010921_090 Hb_133636_010 Hb_133636_010 Hb_011861_110--Hb_133636_010 Hb_000088_160 Hb_000088_160 Hb_011861_110--Hb_000088_160 Hb_007773_030 Hb_007773_030 Hb_011861_110--Hb_007773_030 Hb_002783_320 Hb_002783_320 Hb_011861_110--Hb_002783_320 Hb_011382_050 Hb_011382_050 Hb_101089_010--Hb_011382_050 Hb_003384_070 Hb_003384_070 Hb_101089_010--Hb_003384_070 Hb_000844_010 Hb_000844_010 Hb_101089_010--Hb_000844_010 Hb_101089_010--Hb_164010_090 Hb_101089_010--Hb_085327_010 Hb_101089_010--Hb_004341_010 Hb_025194_010 Hb_025194_010 Hb_003175_020--Hb_025194_010 Hb_124302_030 Hb_124302_030 Hb_003175_020--Hb_124302_030 Hb_141142_010 Hb_141142_010 Hb_003175_020--Hb_141142_010 Hb_003175_020--Hb_133636_010 Hb_007144_010 Hb_007144_010 Hb_003175_020--Hb_007144_010 Hb_003175_020--Hb_101089_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0585172 0 0.0163694 0 0.0208659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0421955 0

CAGE analysis