Hb_000565_010

Information

Type -
Description -
Location Contig565: 22771-23139
Sequence    

Annotation

kegg
ID pop:POPTR_0013s08120g
description hypothetical protein
nr
ID KDP21666.1
description hypothetical protein JCGZ_03337 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JCV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03337 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000565_010 0.0 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
2 Hb_020581_030 0.1952421985 - - -
3 Hb_004041_080 0.2120635338 - - PREDICTED: uncharacterized protein LOC105639186 [Jatropha curcas]
4 Hb_099448_010 0.2353022593 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
5 Hb_085327_010 0.2737567085 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
6 Hb_005392_100 0.2752865587 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
7 Hb_007163_140 0.2760848614 transcription factor TF Family: bHLH hypothetical protein JCGZ_12606 [Jatropha curcas]
8 Hb_008226_110 0.2781888693 - - uncharacterized protein LOC100501343 [Zea mays]
9 Hb_004162_020 0.2833970293 - - -
10 Hb_006971_080 0.2876918713 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_010175_060 0.2884484495 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001660_010 0.2892069978 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001348_220 0.2910216913 - - PREDICTED: defensin Ec-AMP-D2-like [Nelumbo nucifera]
14 Hb_002267_120 0.2913528364 - - hypothetical protein B456_009G136300 [Gossypium raimondii]
15 Hb_048476_010 0.2938950468 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Citrus sinensis]
16 Hb_004894_010 0.2984624944 - - -
17 Hb_002639_010 0.3016446376 - - pseudouridylate synthase, putative [Ricinus communis]
18 Hb_101089_010 0.3049100696 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
19 Hb_131652_010 0.3080424032 - - hypothetical protein CICLE_v10010066mg [Citrus clementina]
20 Hb_002072_020 0.3097782629 - - hypothetical protein JCGZ_16057 [Jatropha curcas]

Gene co-expression network

sample Hb_000565_010 Hb_000565_010 Hb_020581_030 Hb_020581_030 Hb_000565_010--Hb_020581_030 Hb_004041_080 Hb_004041_080 Hb_000565_010--Hb_004041_080 Hb_099448_010 Hb_099448_010 Hb_000565_010--Hb_099448_010 Hb_085327_010 Hb_085327_010 Hb_000565_010--Hb_085327_010 Hb_005392_100 Hb_005392_100 Hb_000565_010--Hb_005392_100 Hb_007163_140 Hb_007163_140 Hb_000565_010--Hb_007163_140 Hb_020581_030--Hb_007163_140 Hb_020581_030--Hb_004041_080 Hb_020581_030--Hb_085327_010 Hb_001454_340 Hb_001454_340 Hb_020581_030--Hb_001454_340 Hb_001687_050 Hb_001687_050 Hb_020581_030--Hb_001687_050 Hb_004041_080--Hb_085327_010 Hb_005663_050 Hb_005663_050 Hb_004041_080--Hb_005663_050 Hb_000334_250 Hb_000334_250 Hb_004041_080--Hb_000334_250 Hb_004041_080--Hb_001454_340 Hb_009515_010 Hb_009515_010 Hb_004041_080--Hb_009515_010 Hb_001660_010 Hb_001660_010 Hb_099448_010--Hb_001660_010 Hb_001348_220 Hb_001348_220 Hb_099448_010--Hb_001348_220 Hb_095532_010 Hb_095532_010 Hb_099448_010--Hb_095532_010 Hb_004875_040 Hb_004875_040 Hb_099448_010--Hb_004875_040 Hb_161981_010 Hb_161981_010 Hb_099448_010--Hb_161981_010 Hb_085327_010--Hb_005663_050 Hb_085327_010--Hb_000334_250 Hb_085327_010--Hb_001454_340 Hb_085327_010--Hb_009515_010 Hb_033006_040 Hb_033006_040 Hb_085327_010--Hb_033006_040 Hb_008226_110 Hb_008226_110 Hb_005392_100--Hb_008226_110 Hb_006971_080 Hb_006971_080 Hb_005392_100--Hb_006971_080 Hb_002267_120 Hb_002267_120 Hb_005392_100--Hb_002267_120 Hb_147355_030 Hb_147355_030 Hb_005392_100--Hb_147355_030 Hb_002942_180 Hb_002942_180 Hb_005392_100--Hb_002942_180 Hb_131652_010 Hb_131652_010 Hb_005392_100--Hb_131652_010 Hb_007163_140--Hb_004041_080 Hb_005380_040 Hb_005380_040 Hb_007163_140--Hb_005380_040 Hb_011861_110 Hb_011861_110 Hb_007163_140--Hb_011861_110 Hb_101089_010 Hb_101089_010 Hb_007163_140--Hb_101089_010 Hb_003175_020 Hb_003175_020 Hb_007163_140--Hb_003175_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.280599 0 0.39571 0 0.352736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.962456 0

CAGE analysis