Hb_001660_010

Information

Type -
Description -
Location Contig1660: 7643-8014
Sequence    

Annotation

kegg
ID rcu:RCOM_1330170
description hypothetical protein
nr
ID XP_002521766.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SSN3
description Toll/interleukin-1 receptor-like protein OS=Arabidopsis thaliana GN=TIR PE=1 SV=1
trembl
ID B9S6Z7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1330170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001660_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_099448_010 0.1566561028 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
3 Hb_000181_450 0.2136453648 - - hypothetical protein JCGZ_20984 [Jatropha curcas]
4 Hb_004724_070 0.2426313673 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
5 Hb_001934_010 0.2449551774 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_112011_010 0.2476924177 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
7 Hb_017866_010 0.2482954325 - - kinase family protein [Populus trichocarpa]
8 Hb_000658_020 0.2494342545 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Musa acuminata subsp. malaccensis]
9 Hb_004724_010 0.24986302 - - -
10 Hb_002461_080 0.2517971159 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
11 Hb_105446_010 0.251814087 - - -
12 Hb_000751_210 0.2538747417 - - PREDICTED: petal death protein isoform X2 [Jatropha curcas]
13 Hb_132438_010 0.2547486893 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
14 Hb_001086_020 0.2586866069 - - hypothetical protein POPTR_0013s01730g [Populus trichocarpa]
15 Hb_001157_130 0.2613429301 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
16 Hb_009543_040 0.2614430605 - - -
17 Hb_001348_220 0.2614645505 - - PREDICTED: defensin Ec-AMP-D2-like [Nelumbo nucifera]
18 Hb_012879_010 0.2633235434 - - conserved hypothetical protein [Ricinus communis]
19 Hb_060272_010 0.2644436862 - - PREDICTED: gibberellin 20 oxidase 2 [Populus euphratica]
20 Hb_000221_070 0.2668823708 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001660_010 Hb_001660_010 Hb_099448_010 Hb_099448_010 Hb_001660_010--Hb_099448_010 Hb_000181_450 Hb_000181_450 Hb_001660_010--Hb_000181_450 Hb_004724_070 Hb_004724_070 Hb_001660_010--Hb_004724_070 Hb_001934_010 Hb_001934_010 Hb_001660_010--Hb_001934_010 Hb_112011_010 Hb_112011_010 Hb_001660_010--Hb_112011_010 Hb_017866_010 Hb_017866_010 Hb_001660_010--Hb_017866_010 Hb_001348_220 Hb_001348_220 Hb_099448_010--Hb_001348_220 Hb_095532_010 Hb_095532_010 Hb_099448_010--Hb_095532_010 Hb_000565_010 Hb_000565_010 Hb_099448_010--Hb_000565_010 Hb_004875_040 Hb_004875_040 Hb_099448_010--Hb_004875_040 Hb_161981_010 Hb_161981_010 Hb_099448_010--Hb_161981_010 Hb_002461_080 Hb_002461_080 Hb_000181_450--Hb_002461_080 Hb_160459_030 Hb_160459_030 Hb_000181_450--Hb_160459_030 Hb_000181_450--Hb_001934_010 Hb_000221_070 Hb_000221_070 Hb_000181_450--Hb_000221_070 Hb_008554_010 Hb_008554_010 Hb_000181_450--Hb_008554_010 Hb_002984_030 Hb_002984_030 Hb_000181_450--Hb_002984_030 Hb_004837_170 Hb_004837_170 Hb_004724_070--Hb_004837_170 Hb_002282_030 Hb_002282_030 Hb_004724_070--Hb_002282_030 Hb_028207_030 Hb_028207_030 Hb_004724_070--Hb_028207_030 Hb_000891_060 Hb_000891_060 Hb_004724_070--Hb_000891_060 Hb_000616_060 Hb_000616_060 Hb_004724_070--Hb_000616_060 Hb_000575_010 Hb_000575_010 Hb_004724_070--Hb_000575_010 Hb_001610_050 Hb_001610_050 Hb_001934_010--Hb_001610_050 Hb_001934_010--Hb_160459_030 Hb_001277_420 Hb_001277_420 Hb_001934_010--Hb_001277_420 Hb_001016_040 Hb_001016_040 Hb_001934_010--Hb_001016_040 Hb_183209_020 Hb_183209_020 Hb_001934_010--Hb_183209_020 Hb_000658_020 Hb_000658_020 Hb_112011_010--Hb_000658_020 Hb_004724_010 Hb_004724_010 Hb_112011_010--Hb_004724_010 Hb_112011_010--Hb_017866_010 Hb_105446_010 Hb_105446_010 Hb_112011_010--Hb_105446_010 Hb_000751_210 Hb_000751_210 Hb_112011_010--Hb_000751_210 Hb_132438_010 Hb_132438_010 Hb_112011_010--Hb_132438_010 Hb_017866_010--Hb_132438_010 Hb_017866_010--Hb_000751_210 Hb_017866_010--Hb_000658_020 Hb_017866_010--Hb_105446_010 Hb_017866_010--Hb_004724_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.286221 0 0.54257 0 0.145444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.266499 0

CAGE analysis