Hb_000450_180

Information

Type -
Description -
Location Contig450: 169552-170348
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_002522629.1
description Disease resistance protein RPS5, putative [Ricinus communis]
swissprot
ID O81825
description Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000450_180 0.0 - - Disease resistance protein RPS5, putative [Ricinus communis]
2 Hb_004648_100 0.153360291 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
3 Hb_062229_010 0.1541088349 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_007253_040 0.1596682144 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
5 Hb_057079_020 0.1627434852 - - conserved hypothetical protein [Ricinus communis]
6 Hb_117840_010 0.1648827841 - - Disease resistance protein RPS5, putative [Ricinus communis]
7 Hb_000544_020 0.1678086728 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
8 Hb_060909_010 0.1691344884 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
9 Hb_165080_010 0.1740051509 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
10 Hb_002218_070 0.1776181711 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
11 Hb_061908_020 0.1791211026 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
12 Hb_169620_010 0.1793779216 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
13 Hb_000778_020 0.1820865672 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
14 Hb_001391_100 0.1827938632 - - AMP dependent ligase, putative [Ricinus communis]
15 Hb_001410_010 0.1859388337 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
16 Hb_003371_210 0.1862987302 - - unnamed protein product [Vitis vinifera]
17 Hb_043939_010 0.1871721556 - - hypothetical protein B456_N011100 [Gossypium raimondii]
18 Hb_008226_100 0.1874757925 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
19 Hb_000532_130 0.1889829463 - - hypothetical protein [Anabaena sp. PCC 7108]
20 Hb_002571_010 0.1894569366 - - cationic amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000450_180 Hb_000450_180 Hb_004648_100 Hb_004648_100 Hb_000450_180--Hb_004648_100 Hb_062229_010 Hb_062229_010 Hb_000450_180--Hb_062229_010 Hb_007253_040 Hb_007253_040 Hb_000450_180--Hb_007253_040 Hb_057079_020 Hb_057079_020 Hb_000450_180--Hb_057079_020 Hb_117840_010 Hb_117840_010 Hb_000450_180--Hb_117840_010 Hb_000544_020 Hb_000544_020 Hb_000450_180--Hb_000544_020 Hb_060909_010 Hb_060909_010 Hb_004648_100--Hb_060909_010 Hb_004648_100--Hb_000544_020 Hb_169620_010 Hb_169620_010 Hb_004648_100--Hb_169620_010 Hb_004648_100--Hb_057079_020 Hb_001410_010 Hb_001410_010 Hb_004648_100--Hb_001410_010 Hb_011310_200 Hb_011310_200 Hb_004648_100--Hb_011310_200 Hb_001391_100 Hb_001391_100 Hb_062229_010--Hb_001391_100 Hb_061908_020 Hb_061908_020 Hb_062229_010--Hb_061908_020 Hb_004605_020 Hb_004605_020 Hb_062229_010--Hb_004605_020 Hb_043939_010 Hb_043939_010 Hb_062229_010--Hb_043939_010 Hb_000197_230 Hb_000197_230 Hb_062229_010--Hb_000197_230 Hb_010261_030 Hb_010261_030 Hb_062229_010--Hb_010261_030 Hb_000532_130 Hb_000532_130 Hb_007253_040--Hb_000532_130 Hb_007259_020 Hb_007259_020 Hb_007253_040--Hb_007259_020 Hb_008175_030 Hb_008175_030 Hb_007253_040--Hb_008175_030 Hb_007253_040--Hb_060909_010 Hb_008226_100 Hb_008226_100 Hb_007253_040--Hb_008226_100 Hb_007618_010 Hb_007618_010 Hb_007253_040--Hb_007618_010 Hb_000778_020 Hb_000778_020 Hb_057079_020--Hb_000778_020 Hb_057079_020--Hb_001410_010 Hb_013749_060 Hb_013749_060 Hb_057079_020--Hb_013749_060 Hb_057079_020--Hb_011310_200 Hb_057079_020--Hb_008175_030 Hb_010253_020 Hb_010253_020 Hb_057079_020--Hb_010253_020 Hb_002218_070 Hb_002218_070 Hb_117840_010--Hb_002218_070 Hb_117840_010--Hb_010261_030 Hb_002600_010 Hb_002600_010 Hb_117840_010--Hb_002600_010 Hb_062479_010 Hb_062479_010 Hb_117840_010--Hb_062479_010 Hb_117840_010--Hb_062229_010 Hb_001879_050 Hb_001879_050 Hb_117840_010--Hb_001879_050 Hb_000544_020--Hb_060909_010 Hb_158696_010 Hb_158696_010 Hb_000544_020--Hb_158696_010 Hb_000984_100 Hb_000984_100 Hb_000544_020--Hb_000984_100 Hb_001248_110 Hb_001248_110 Hb_000544_020--Hb_001248_110 Hb_000544_020--Hb_000532_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0440181 4.79994 0.575225 2.01677 0.137981 1.00519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.241754 0.063351 0 2.19068 1.75473

CAGE analysis