Hb_130498_010

Information

Type -
Description -
Location Contig130498: 39-1694
Sequence    

Annotation

kegg
ID tcc:TCM_041965
description Laccase 17
nr
ID XP_007016607.1
description Laccase 17 [Theobroma cacao]
swissprot
ID Q9FJD5
description Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 SV=1
trembl
ID A0A061GXP8
description Laccase OS=Theobroma cacao GN=TCM_041965 PE=3 SV=1
Gene Ontology
ID GO:0005507
description laccase 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09074: 1469-1676
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130498_010 0.0 - - Laccase 17 [Theobroma cacao]
2 Hb_003659_010 0.163496412 - - aldo/keto reductase AKR [Manihot esculenta]
3 Hb_002701_160 0.1719607873 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
4 Hb_000340_350 0.1809173823 - - PREDICTED: sugar transporter ERD6-like 7 isoform X1 [Jatropha curcas]
5 Hb_000152_770 0.1914811209 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
6 Hb_004551_050 0.1985669075 - - PREDICTED: glucose-6-phosphate/phosphate translocator 2, chloroplastic [Jatropha curcas]
7 Hb_007576_140 0.2017332925 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
8 Hb_001634_030 0.2017916786 - - Receptor like protein 1, putative [Theobroma cacao]
9 Hb_005332_010 0.2022609685 - - hypothetical protein EUGRSUZ_J02276 [Eucalyptus grandis]
10 Hb_006269_030 0.2063686415 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
11 Hb_000723_050 0.2063729416 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
12 Hb_001240_050 0.2076198231 - - PREDICTED: CSC1-like protein At1g32090 [Jatropha curcas]
13 Hb_011512_010 0.2161622961 - - glutathione s-transferase, putative [Ricinus communis]
14 Hb_001226_100 0.22034182 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_009296_060 0.2264493262 - - glutathione s-transferase, putative [Ricinus communis]
16 Hb_177321_040 0.2274158184 - - hypothetical protein JCGZ_06328 [Jatropha curcas]
17 Hb_001439_040 0.2287959844 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
18 Hb_007621_010 0.2299912026 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
19 Hb_001195_220 0.2303569147 - - sugar transporter, putative [Ricinus communis]
20 Hb_134174_010 0.2306472855 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_130498_010 Hb_130498_010 Hb_003659_010 Hb_003659_010 Hb_130498_010--Hb_003659_010 Hb_002701_160 Hb_002701_160 Hb_130498_010--Hb_002701_160 Hb_000340_350 Hb_000340_350 Hb_130498_010--Hb_000340_350 Hb_000152_770 Hb_000152_770 Hb_130498_010--Hb_000152_770 Hb_004551_050 Hb_004551_050 Hb_130498_010--Hb_004551_050 Hb_007576_140 Hb_007576_140 Hb_130498_010--Hb_007576_140 Hb_001195_220 Hb_001195_220 Hb_003659_010--Hb_001195_220 Hb_003659_010--Hb_007576_140 Hb_003659_010--Hb_002701_160 Hb_001240_050 Hb_001240_050 Hb_003659_010--Hb_001240_050 Hb_000679_110 Hb_000679_110 Hb_003659_010--Hb_000679_110 Hb_002235_050 Hb_002235_050 Hb_003659_010--Hb_002235_050 Hb_005545_020 Hb_005545_020 Hb_002701_160--Hb_005545_020 Hb_001300_170 Hb_001300_170 Hb_002701_160--Hb_001300_170 Hb_013726_010 Hb_013726_010 Hb_002701_160--Hb_013726_010 Hb_003299_020 Hb_003299_020 Hb_002701_160--Hb_003299_020 Hb_000723_050 Hb_000723_050 Hb_000340_350--Hb_000723_050 Hb_033312_050 Hb_033312_050 Hb_000340_350--Hb_033312_050 Hb_000760_080 Hb_000760_080 Hb_000340_350--Hb_000760_080 Hb_001634_030 Hb_001634_030 Hb_000340_350--Hb_001634_030 Hb_001300_180 Hb_001300_180 Hb_000340_350--Hb_001300_180 Hb_134174_010 Hb_134174_010 Hb_000340_350--Hb_134174_010 Hb_000934_240 Hb_000934_240 Hb_000152_770--Hb_000934_240 Hb_007007_130 Hb_007007_130 Hb_000152_770--Hb_007007_130 Hb_004446_060 Hb_004446_060 Hb_000152_770--Hb_004446_060 Hb_003592_060 Hb_003592_060 Hb_000152_770--Hb_003592_060 Hb_001226_100 Hb_001226_100 Hb_000152_770--Hb_001226_100 Hb_001500_080 Hb_001500_080 Hb_000152_770--Hb_001500_080 Hb_004551_050--Hb_001634_030 Hb_005332_010 Hb_005332_010 Hb_004551_050--Hb_005332_010 Hb_022092_050 Hb_022092_050 Hb_004551_050--Hb_022092_050 Hb_000567_060 Hb_000567_060 Hb_004551_050--Hb_000567_060 Hb_004551_050--Hb_000723_050 Hb_004525_110 Hb_004525_110 Hb_004551_050--Hb_004525_110 Hb_007576_140--Hb_001195_220 Hb_007123_080 Hb_007123_080 Hb_007576_140--Hb_007123_080 Hb_007576_140--Hb_000679_110 Hb_025787_010 Hb_025787_010 Hb_007576_140--Hb_025787_010 Hb_000567_090 Hb_000567_090 Hb_007576_140--Hb_000567_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0180658 0.186194 1.27129 0.168793 0 0.0158789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.12381 0.0973899 0.0603459 0.884539 0.268522

CAGE analysis