Hb_001300_180

Information

Type -
Description -
Location Contig1300: 128951-132750
Sequence    

Annotation

kegg
ID pop:POPTR_0014s12960g
description POPTRDRAFT_572749; hydroxyproline-rich glycoprotein
nr
ID XP_002321036.1
description hydroxyproline-rich glycoprotein [Populus trichocarpa]
swissprot
ID Q94F57
description Classical arabinogalactan protein 26 OS=Arabidopsis thaliana GN=AGP26 PE=2 SV=2
trembl
ID B9I9X0
description Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0014s12960g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08982: 129486-129628 , PASA_asmbl_08983: 130426-131198
cDNA
(Sanger)
(ID:Location)		 006_K12.ab1: 130425-131144 , 020_P02.ab1: 130426-131198 , 024_N19.ab1: 130446-131152 , 045_D19.ab1: 130426-131198

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001300_180 0.0 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
2 Hb_134174_010 0.0938521616 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_008899_030 0.1290163155 - - Lipase class 3-related protein, putative [Theobroma cacao]
4 Hb_000340_350 0.1453206481 - - PREDICTED: sugar transporter ERD6-like 7 isoform X1 [Jatropha curcas]
5 Hb_004627_020 0.1540852925 - - Protein MLO, putative [Ricinus communis]
6 Hb_001345_020 0.1558681686 - - hypothetical protein POPTR_0007s10400g [Populus trichocarpa]
7 Hb_000723_050 0.1602538031 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
8 Hb_002503_050 0.1626527809 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
9 Hb_003881_020 0.1638626296 - - PREDICTED: stellacyanin-like [Jatropha curcas]
10 Hb_083412_010 0.1656030693 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
11 Hb_033312_050 0.1658306242 - - PREDICTED: uncharacterized protein LOC105638598, partial [Jatropha curcas]
12 Hb_000501_110 0.1676051004 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Populus euphratica]
13 Hb_002984_040 0.1682796306 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_001439_040 0.169260039 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
15 Hb_001565_010 0.1725703834 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
16 Hb_001454_290 0.1775166122 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
17 Hb_018212_010 0.1786488425 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
18 Hb_005730_070 0.1795858642 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 8 [Jatropha curcas]
19 Hb_039022_020 0.1805331273 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
20 Hb_000261_420 0.1807163952 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]

Gene co-expression network

sample Hb_001300_180 Hb_001300_180 Hb_134174_010 Hb_134174_010 Hb_001300_180--Hb_134174_010 Hb_008899_030 Hb_008899_030 Hb_001300_180--Hb_008899_030 Hb_000340_350 Hb_000340_350 Hb_001300_180--Hb_000340_350 Hb_004627_020 Hb_004627_020 Hb_001300_180--Hb_004627_020 Hb_001345_020 Hb_001345_020 Hb_001300_180--Hb_001345_020 Hb_000723_050 Hb_000723_050 Hb_001300_180--Hb_000723_050 Hb_002984_040 Hb_002984_040 Hb_134174_010--Hb_002984_040 Hb_003881_020 Hb_003881_020 Hb_134174_010--Hb_003881_020 Hb_000501_110 Hb_000501_110 Hb_134174_010--Hb_000501_110 Hb_001634_030 Hb_001634_030 Hb_134174_010--Hb_001634_030 Hb_137272_010 Hb_137272_010 Hb_134174_010--Hb_137272_010 Hb_011537_020 Hb_011537_020 Hb_008899_030--Hb_011537_020 Hb_008899_030--Hb_004627_020 Hb_039022_020 Hb_039022_020 Hb_008899_030--Hb_039022_020 Hb_000261_420 Hb_000261_420 Hb_008899_030--Hb_000261_420 Hb_001018_080 Hb_001018_080 Hb_008899_030--Hb_001018_080 Hb_011472_020 Hb_011472_020 Hb_008899_030--Hb_011472_020 Hb_000340_350--Hb_000723_050 Hb_033312_050 Hb_033312_050 Hb_000340_350--Hb_033312_050 Hb_000760_080 Hb_000760_080 Hb_000340_350--Hb_000760_080 Hb_000340_350--Hb_001634_030 Hb_000340_350--Hb_134174_010 Hb_001565_010 Hb_001565_010 Hb_004627_020--Hb_001565_010 Hb_009554_030 Hb_009554_030 Hb_004627_020--Hb_009554_030 Hb_004627_020--Hb_011537_020 Hb_000203_080 Hb_000203_080 Hb_004627_020--Hb_000203_080 Hb_170878_070 Hb_170878_070 Hb_004627_020--Hb_170878_070 Hb_001349_020 Hb_001349_020 Hb_001345_020--Hb_001349_020 Hb_014250_010 Hb_014250_010 Hb_001345_020--Hb_014250_010 Hb_002503_050 Hb_002503_050 Hb_001345_020--Hb_002503_050 Hb_005679_110 Hb_005679_110 Hb_001345_020--Hb_005679_110 Hb_001638_150 Hb_001638_150 Hb_001345_020--Hb_001638_150 Hb_000567_060 Hb_000567_060 Hb_001345_020--Hb_000567_060 Hb_005730_070 Hb_005730_070 Hb_000723_050--Hb_005730_070 Hb_000723_050--Hb_033312_050 Hb_001454_290 Hb_001454_290 Hb_000723_050--Hb_001454_290 Hb_004551_050 Hb_004551_050 Hb_000723_050--Hb_004551_050 Hb_008554_090 Hb_008554_090 Hb_000723_050--Hb_008554_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.373237 0.890609 0.342716 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.121649 0 0.815557 0.362299

CAGE analysis