Hb_147505_010

Information

Type -
Description -
Location Contig147505: 2995-8240
Sequence    

Annotation

kegg
ID rcu:RCOM_0065600
description hypothetical protein
nr
ID XP_012071350.1
description PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KRP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05038 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12024: 2825-8250 , PASA_asmbl_12025: 6216-6715
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_147505_010 0.0 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
2 Hb_003929_140 0.080287564 - - DNA binding protein, putative [Ricinus communis]
3 Hb_001638_300 0.0829782277 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
4 Hb_004629_010 0.0893933762 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
5 Hb_000661_020 0.0898159532 - - BnaC08g27190D [Brassica napus]
6 Hb_000563_600 0.0902325759 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
7 Hb_000028_510 0.0937517256 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
8 Hb_002000_060 0.094353272 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]
9 Hb_002081_120 0.094431477 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
10 Hb_004631_190 0.097701748 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
11 Hb_006787_060 0.0981242004 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
12 Hb_000046_070 0.1010505488 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
13 Hb_009112_010 0.1019349566 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
14 Hb_003470_030 0.1023639461 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
15 Hb_000230_430 0.1058213656 - - catalytic, putative [Ricinus communis]
16 Hb_001231_030 0.1063331438 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
17 Hb_001405_190 0.1064750289 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
18 Hb_000122_220 0.1074881264 - - Prenylated Rab acceptor protein, putative [Ricinus communis]
19 Hb_001231_090 0.1077521202 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
20 Hb_000922_020 0.1082565103 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_147505_010 Hb_147505_010 Hb_003929_140 Hb_003929_140 Hb_147505_010--Hb_003929_140 Hb_001638_300 Hb_001638_300 Hb_147505_010--Hb_001638_300 Hb_004629_010 Hb_004629_010 Hb_147505_010--Hb_004629_010 Hb_000661_020 Hb_000661_020 Hb_147505_010--Hb_000661_020 Hb_000563_600 Hb_000563_600 Hb_147505_010--Hb_000563_600 Hb_000028_510 Hb_000028_510 Hb_147505_010--Hb_000028_510 Hb_003929_140--Hb_000661_020 Hb_002022_070 Hb_002022_070 Hb_003929_140--Hb_002022_070 Hb_003929_140--Hb_000028_510 Hb_003929_140--Hb_004629_010 Hb_000753_100 Hb_000753_100 Hb_003929_140--Hb_000753_100 Hb_001231_030 Hb_001231_030 Hb_003929_140--Hb_001231_030 Hb_132840_100 Hb_132840_100 Hb_001638_300--Hb_132840_100 Hb_000365_330 Hb_000365_330 Hb_001638_300--Hb_000365_330 Hb_004129_070 Hb_004129_070 Hb_001638_300--Hb_004129_070 Hb_032920_130 Hb_032920_130 Hb_001638_300--Hb_032920_130 Hb_001033_050 Hb_001033_050 Hb_001638_300--Hb_001033_050 Hb_009112_010 Hb_009112_010 Hb_004629_010--Hb_009112_010 Hb_006787_060 Hb_006787_060 Hb_004629_010--Hb_006787_060 Hb_000120_660 Hb_000120_660 Hb_004629_010--Hb_000120_660 Hb_002392_030 Hb_002392_030 Hb_004629_010--Hb_002392_030 Hb_005104_010 Hb_005104_010 Hb_004629_010--Hb_005104_010 Hb_004631_190 Hb_004631_190 Hb_000661_020--Hb_004631_190 Hb_002739_130 Hb_002739_130 Hb_000661_020--Hb_002739_130 Hb_016734_090 Hb_016734_090 Hb_000661_020--Hb_016734_090 Hb_000922_020 Hb_000922_020 Hb_000661_020--Hb_000922_020 Hb_007929_080 Hb_007929_080 Hb_000661_020--Hb_007929_080 Hb_000599_080 Hb_000599_080 Hb_000563_600--Hb_000599_080 Hb_000563_600--Hb_004631_190 Hb_002311_070 Hb_002311_070 Hb_000563_600--Hb_002311_070 Hb_000563_600--Hb_000922_020 Hb_000002_490 Hb_000002_490 Hb_000563_600--Hb_000002_490 Hb_000718_070 Hb_000718_070 Hb_000563_600--Hb_000718_070 Hb_000028_510--Hb_002022_070 Hb_001021_200 Hb_001021_200 Hb_000028_510--Hb_001021_200 Hb_002267_140 Hb_002267_140 Hb_000028_510--Hb_002267_140 Hb_000028_510--Hb_004629_010 Hb_002615_090 Hb_002615_090 Hb_000028_510--Hb_002615_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1649 9.70993 6.4227 6.4496 8.05999 6.50952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.36272 1.90477 4.01867 3.38666 6.16013

CAGE analysis