Hb_002081_010

Information

Type -
Description -
Location Contig2081: 1692-19786
Sequence    

Annotation

kegg
ID rcu:RCOM_0834990
description hypothetical protein
nr
ID XP_002532426.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T2F7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0834990 PE=4 SV=1
Gene Ontology
ID GO:0008284
description protein grip-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21541: 1727-3660 , PASA_asmbl_21542: 12268-19803 , PASA_asmbl_21543: 4556-13023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002081_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000010_390 0.0769913219 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
3 Hb_003884_030 0.0816922205 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
4 Hb_007904_030 0.0921589716 - - PREDICTED: nuclear mitotic apparatus protein 1 [Jatropha curcas]
5 Hb_007062_020 0.0940630561 - - gcn4-complementing protein, putative [Ricinus communis]
6 Hb_117552_010 0.0975234672 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000803_260 0.0975285104 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
8 Hb_027380_140 0.0978152592 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
9 Hb_000853_210 0.0979062238 - - PREDICTED: uncharacterized protein LOC105642575 isoform X1 [Jatropha curcas]
10 Hb_001329_140 0.0991238646 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
11 Hb_002232_030 0.0996538349 - - Pinin, putative [Ricinus communis]
12 Hb_000849_020 0.1027256235 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
13 Hb_000661_110 0.1035813173 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
14 Hb_004228_010 0.1045870965 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
15 Hb_000035_410 0.1086939814 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
16 Hb_006915_060 0.1098046449 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
17 Hb_001498_010 0.1102350891 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
18 Hb_002025_060 0.1103663576 - - PREDICTED: pentatricopeptide repeat-containing protein At1g73400, mitochondrial [Jatropha curcas]
19 Hb_003656_180 0.1107178388 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
20 Hb_000684_250 0.111218685 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]

Gene co-expression network

sample Hb_002081_010 Hb_002081_010 Hb_000010_390 Hb_000010_390 Hb_002081_010--Hb_000010_390 Hb_003884_030 Hb_003884_030 Hb_002081_010--Hb_003884_030 Hb_007904_030 Hb_007904_030 Hb_002081_010--Hb_007904_030 Hb_007062_020 Hb_007062_020 Hb_002081_010--Hb_007062_020 Hb_117552_010 Hb_117552_010 Hb_002081_010--Hb_117552_010 Hb_000803_260 Hb_000803_260 Hb_002081_010--Hb_000803_260 Hb_000010_390--Hb_117552_010 Hb_012286_010 Hb_012286_010 Hb_000010_390--Hb_012286_010 Hb_001898_090 Hb_001898_090 Hb_000010_390--Hb_001898_090 Hb_000850_050 Hb_000850_050 Hb_000010_390--Hb_000850_050 Hb_003656_180 Hb_003656_180 Hb_000010_390--Hb_003656_180 Hb_027380_140 Hb_027380_140 Hb_003884_030--Hb_027380_140 Hb_000035_410 Hb_000035_410 Hb_003884_030--Hb_000035_410 Hb_089140_050 Hb_089140_050 Hb_003884_030--Hb_089140_050 Hb_004108_100 Hb_004108_100 Hb_003884_030--Hb_004108_100 Hb_003884_030--Hb_003656_180 Hb_000429_220 Hb_000429_220 Hb_003884_030--Hb_000429_220 Hb_000853_210 Hb_000853_210 Hb_007904_030--Hb_000853_210 Hb_000684_250 Hb_000684_250 Hb_007904_030--Hb_000684_250 Hb_004228_010 Hb_004228_010 Hb_007904_030--Hb_004228_010 Hb_000878_180 Hb_000878_180 Hb_007904_030--Hb_000878_180 Hb_004676_010 Hb_004676_010 Hb_007904_030--Hb_004676_010 Hb_002025_060 Hb_002025_060 Hb_007904_030--Hb_002025_060 Hb_000785_040 Hb_000785_040 Hb_007062_020--Hb_000785_040 Hb_007062_020--Hb_027380_140 Hb_001269_210 Hb_001269_210 Hb_007062_020--Hb_001269_210 Hb_000470_070 Hb_000470_070 Hb_007062_020--Hb_000470_070 Hb_009296_010 Hb_009296_010 Hb_007062_020--Hb_009296_010 Hb_012053_080 Hb_012053_080 Hb_007062_020--Hb_012053_080 Hb_117552_010--Hb_003656_180 Hb_002301_080 Hb_002301_080 Hb_117552_010--Hb_002301_080 Hb_002235_160 Hb_002235_160 Hb_117552_010--Hb_002235_160 Hb_001493_040 Hb_001493_040 Hb_117552_010--Hb_001493_040 Hb_002400_240 Hb_002400_240 Hb_117552_010--Hb_002400_240 Hb_000922_370 Hb_000922_370 Hb_117552_010--Hb_000922_370 Hb_001329_140 Hb_001329_140 Hb_000803_260--Hb_001329_140 Hb_000318_390 Hb_000318_390 Hb_000803_260--Hb_000318_390 Hb_001862_180 Hb_001862_180 Hb_000803_260--Hb_001862_180 Hb_000803_260--Hb_000684_250 Hb_001472_090 Hb_001472_090 Hb_000803_260--Hb_001472_090 Hb_005901_020 Hb_005901_020 Hb_000803_260--Hb_005901_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.84818 7.66744 5.90824 5.37963 8.65076 12.4336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.54346 1.88091 8.80821 4.63074 9.45464

CAGE analysis