Hb_000010_390

Information

Type transcription factor
Description TF Family: C2H2
Location Contig10: 423660-432744
Sequence    

Annotation

kegg
ID rcu:RCOM_1507500
description nucleic acid binding protein, putative
nr
ID XP_012079921.1
description PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
swissprot
ID Q9STM3
description Lysine-specific demethylase REF6 OS=Arabidopsis thaliana GN=REF6 PE=1 SV=1
trembl
ID B9RAP0
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1507500 PE=4 SV=1
Gene Ontology
ID GO:0003676
description lysine-specific demethylase ref6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00183: 424527-428735 , PASA_asmbl_00186: 430936-432740
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_390 0.0 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
2 Hb_002081_010 0.0769913219 - - conserved hypothetical protein [Ricinus communis]
3 Hb_117552_010 0.0938633245 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_012286_010 0.1035692929 - - PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Jatropha curcas]
5 Hb_001898_090 0.1060260713 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
6 Hb_000850_050 0.109978724 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
7 Hb_003656_180 0.1102923308 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
8 Hb_006915_060 0.1119901561 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
9 Hb_004570_020 0.1125563221 - - PREDICTED: protein TIC 100 [Jatropha curcas]
10 Hb_003216_080 0.1135494235 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
11 Hb_003884_030 0.1140268729 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
12 Hb_015026_050 0.1149504342 - - XPA-binding protein, putative [Ricinus communis]
13 Hb_000072_150 0.1151654464 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
14 Hb_015884_030 0.1152672753 - - PREDICTED: uncharacterized protein LOC105647778 isoform X1 [Jatropha curcas]
15 Hb_001599_030 0.1154107886 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
16 Hb_011030_010 0.1154698386 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
17 Hb_003544_100 0.1154868583 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
18 Hb_000803_260 0.1167294917 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
19 Hb_002235_160 0.1170262547 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
20 Hb_000849_020 0.1187050783 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000010_390 Hb_000010_390 Hb_002081_010 Hb_002081_010 Hb_000010_390--Hb_002081_010 Hb_117552_010 Hb_117552_010 Hb_000010_390--Hb_117552_010 Hb_012286_010 Hb_012286_010 Hb_000010_390--Hb_012286_010 Hb_001898_090 Hb_001898_090 Hb_000010_390--Hb_001898_090 Hb_000850_050 Hb_000850_050 Hb_000010_390--Hb_000850_050 Hb_003656_180 Hb_003656_180 Hb_000010_390--Hb_003656_180 Hb_003884_030 Hb_003884_030 Hb_002081_010--Hb_003884_030 Hb_007904_030 Hb_007904_030 Hb_002081_010--Hb_007904_030 Hb_007062_020 Hb_007062_020 Hb_002081_010--Hb_007062_020 Hb_002081_010--Hb_117552_010 Hb_000803_260 Hb_000803_260 Hb_002081_010--Hb_000803_260 Hb_117552_010--Hb_003656_180 Hb_002301_080 Hb_002301_080 Hb_117552_010--Hb_002301_080 Hb_002235_160 Hb_002235_160 Hb_117552_010--Hb_002235_160 Hb_001493_040 Hb_001493_040 Hb_117552_010--Hb_001493_040 Hb_002400_240 Hb_002400_240 Hb_117552_010--Hb_002400_240 Hb_000922_370 Hb_000922_370 Hb_117552_010--Hb_000922_370 Hb_002024_010 Hb_002024_010 Hb_012286_010--Hb_002024_010 Hb_002276_060 Hb_002276_060 Hb_012286_010--Hb_002276_060 Hb_004994_380 Hb_004994_380 Hb_012286_010--Hb_004994_380 Hb_002193_010 Hb_002193_010 Hb_012286_010--Hb_002193_010 Hb_008489_020 Hb_008489_020 Hb_012286_010--Hb_008489_020 Hb_000170_190 Hb_000170_190 Hb_012286_010--Hb_000170_190 Hb_000849_020 Hb_000849_020 Hb_001898_090--Hb_000849_020 Hb_000010_180 Hb_000010_180 Hb_001898_090--Hb_000010_180 Hb_000107_400 Hb_000107_400 Hb_001898_090--Hb_000107_400 Hb_001898_090--Hb_012286_010 Hb_002749_110 Hb_002749_110 Hb_001898_090--Hb_002749_110 Hb_007810_100 Hb_007810_100 Hb_000850_050--Hb_007810_100 Hb_004218_240 Hb_004218_240 Hb_000850_050--Hb_004218_240 Hb_001718_050 Hb_001718_050 Hb_000850_050--Hb_001718_050 Hb_000850_050--Hb_117552_010 Hb_004306_080 Hb_004306_080 Hb_000850_050--Hb_004306_080 Hb_000850_050--Hb_003656_180 Hb_102269_010 Hb_102269_010 Hb_003656_180--Hb_102269_010 Hb_003656_180--Hb_003884_030 Hb_000785_040 Hb_000785_040 Hb_003656_180--Hb_000785_040 Hb_001473_090 Hb_001473_090 Hb_003656_180--Hb_001473_090 Hb_002551_070 Hb_002551_070 Hb_003656_180--Hb_002551_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8967 8.114 4.46968 4.44066 9.60066 15.2236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.02331 2.16318 8.54051 4.59362 11.1133

CAGE analysis