Hb_002903_110

Information

Type -
Description -
Location Contig2903: 131659-133641
Sequence    

Annotation

kegg
ID rcu:RCOM_0935630
description RNA polymerase-associated protein RTF1, putative
nr
ID XP_012091565.1
description PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
swissprot
ID Q9C950
description Protein RTF1 homolog OS=Arabidopsis thaliana GN=VIP5 PE=1 SV=1
trembl
ID A0A067JDU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21409 PE=4 SV=1
Gene Ontology
ID GO:0005634
description rna polymerase-associated protein rtf1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30440: 131257-138512 , PASA_asmbl_30441: 131353-138533
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002903_110 0.0 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
2 Hb_000088_010 0.0928006394 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_002477_260 0.0949746621 - - PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
4 Hb_000358_080 0.0964400665 - - Ribonuclease 3 [Gossypium arboreum]
5 Hb_000608_120 0.1029065164 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
6 Hb_001047_020 0.1044497434 - - -
7 Hb_004046_010 0.1062148906 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
8 Hb_001936_050 0.1088906947 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
9 Hb_000836_360 0.109887386 - - PREDICTED: uncharacterized protein LOC105642935 isoform X2 [Jatropha curcas]
10 Hb_007943_080 0.1181397929 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
11 Hb_000134_350 0.1185130323 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8-like [Jatropha curcas]
12 Hb_011496_010 0.1205116706 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
13 Hb_000446_090 0.1205531947 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
14 Hb_000236_250 0.1208426758 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000479_330 0.1208922906 - - PREDICTED: uncharacterized protein LOC105644113 isoform X1 [Jatropha curcas]
16 Hb_012395_190 0.121657296 - - hypothetical protein B456_005G053800 [Gossypium raimondii]
17 Hb_006091_030 0.1221462267 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
18 Hb_005375_030 0.1232950775 - - DEAD/DEAH box helicase factory [Malus domestica]
19 Hb_000138_040 0.1233935378 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
20 Hb_000490_030 0.1243759862 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_002903_110 Hb_002903_110 Hb_000088_010 Hb_000088_010 Hb_002903_110--Hb_000088_010 Hb_002477_260 Hb_002477_260 Hb_002903_110--Hb_002477_260 Hb_000358_080 Hb_000358_080 Hb_002903_110--Hb_000358_080 Hb_000608_120 Hb_000608_120 Hb_002903_110--Hb_000608_120 Hb_001047_020 Hb_001047_020 Hb_002903_110--Hb_001047_020 Hb_004046_010 Hb_004046_010 Hb_002903_110--Hb_004046_010 Hb_012395_190 Hb_012395_190 Hb_000088_010--Hb_012395_190 Hb_007943_080 Hb_007943_080 Hb_000088_010--Hb_007943_080 Hb_000088_010--Hb_000358_080 Hb_006091_030 Hb_006091_030 Hb_000088_010--Hb_006091_030 Hb_003861_080 Hb_003861_080 Hb_000088_010--Hb_003861_080 Hb_127979_010 Hb_127979_010 Hb_002477_260--Hb_127979_010 Hb_011496_010 Hb_011496_010 Hb_002477_260--Hb_011496_010 Hb_003404_030 Hb_003404_030 Hb_002477_260--Hb_003404_030 Hb_001936_050 Hb_001936_050 Hb_002477_260--Hb_001936_050 Hb_000057_060 Hb_000057_060 Hb_002477_260--Hb_000057_060 Hb_000490_030 Hb_000490_030 Hb_000358_080--Hb_000490_030 Hb_000358_080--Hb_007943_080 Hb_000358_080--Hb_001936_050 Hb_000138_040 Hb_000138_040 Hb_000358_080--Hb_000138_040 Hb_000358_080--Hb_006091_030 Hb_010710_010 Hb_010710_010 Hb_000358_080--Hb_010710_010 Hb_003494_240 Hb_003494_240 Hb_000608_120--Hb_003494_240 Hb_001454_060 Hb_001454_060 Hb_000608_120--Hb_001454_060 Hb_003581_140 Hb_003581_140 Hb_000608_120--Hb_003581_140 Hb_002215_050 Hb_002215_050 Hb_000608_120--Hb_002215_050 Hb_003638_140 Hb_003638_140 Hb_000608_120--Hb_003638_140 Hb_000703_080 Hb_000703_080 Hb_000608_120--Hb_000703_080 Hb_001840_080 Hb_001840_080 Hb_001047_020--Hb_001840_080 Hb_001047_020--Hb_002215_050 Hb_000120_800 Hb_000120_800 Hb_001047_020--Hb_000120_800 Hb_002686_270 Hb_002686_270 Hb_001047_020--Hb_002686_270 Hb_000446_090 Hb_000446_090 Hb_001047_020--Hb_000446_090 Hb_001047_020--Hb_004046_010 Hb_005062_070 Hb_005062_070 Hb_004046_010--Hb_005062_070 Hb_015306_020 Hb_015306_020 Hb_004046_010--Hb_015306_020 Hb_002890_340 Hb_002890_340 Hb_004046_010--Hb_002890_340 Hb_002477_160 Hb_002477_160 Hb_004046_010--Hb_002477_160 Hb_011918_080 Hb_011918_080 Hb_004046_010--Hb_011918_080 Hb_004046_010--Hb_000446_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
640.49 234.835 40.5805 58.1115 442.134 721.15
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
430.898 163.794 637.345 128.036 113.967

CAGE analysis