Hb_003581_140

Information

Type -
Description -
Location Contig3581: 108844-113006
Sequence    

Annotation

kegg
ID vvi:100245034
description hypersensitive-induced response protein 1
nr
ID XP_010256425.1
description PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
swissprot
ID Q9CAR7
description Hypersensitive-induced response protein 2 OS=Arabidopsis thaliana GN=HIR2 PE=1 SV=1
trembl
ID W9RPV7
description Hypersensitive-induced response protein 2 OS=Morus notabilis GN=L484_021089 PE=4 SV=1
Gene Ontology
ID GO:0016020
description hypersensitive-induced response protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36946: 108919-111799
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_140 0.0 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
2 Hb_000078_130 0.0750999866 - - -
3 Hb_000608_120 0.0765624573 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
4 Hb_000490_030 0.0829647162 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
5 Hb_002039_010 0.0840487267 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
6 Hb_002890_340 0.0861618533 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
7 Hb_000418_100 0.0871291722 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
8 Hb_000358_080 0.0871475632 - - Ribonuclease 3 [Gossypium arboreum]
9 Hb_028639_060 0.0876262841 - - transporter, putative [Ricinus communis]
10 Hb_006091_030 0.0887133324 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
11 Hb_010710_010 0.0906999379 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
12 Hb_002169_010 0.0908510892 - - PREDICTED: la-related protein 6B [Jatropha curcas]
13 Hb_000107_100 0.0917677511 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
14 Hb_000172_400 0.093270327 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
15 Hb_001454_060 0.0935351552 - - uncharacterized protein LOC100527252 [Glycine max]
16 Hb_082609_020 0.0944162698 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000462_150 0.0952384316 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
18 Hb_002014_080 0.0973528837 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
19 Hb_002874_070 0.0976929505 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
20 Hb_001720_050 0.0981683962 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003581_140 Hb_003581_140 Hb_000078_130 Hb_000078_130 Hb_003581_140--Hb_000078_130 Hb_000608_120 Hb_000608_120 Hb_003581_140--Hb_000608_120 Hb_000490_030 Hb_000490_030 Hb_003581_140--Hb_000490_030 Hb_002039_010 Hb_002039_010 Hb_003581_140--Hb_002039_010 Hb_002890_340 Hb_002890_340 Hb_003581_140--Hb_002890_340 Hb_000418_100 Hb_000418_100 Hb_003581_140--Hb_000418_100 Hb_001454_060 Hb_001454_060 Hb_000078_130--Hb_001454_060 Hb_002014_080 Hb_002014_080 Hb_000078_130--Hb_002014_080 Hb_000078_130--Hb_000490_030 Hb_000230_330 Hb_000230_330 Hb_000078_130--Hb_000230_330 Hb_006091_030 Hb_006091_030 Hb_000078_130--Hb_006091_030 Hb_003494_240 Hb_003494_240 Hb_000608_120--Hb_003494_240 Hb_000608_120--Hb_001454_060 Hb_002215_050 Hb_002215_050 Hb_000608_120--Hb_002215_050 Hb_003638_140 Hb_003638_140 Hb_000608_120--Hb_003638_140 Hb_000703_080 Hb_000703_080 Hb_000608_120--Hb_000703_080 Hb_001936_050 Hb_001936_050 Hb_000490_030--Hb_001936_050 Hb_029281_010 Hb_029281_010 Hb_000490_030--Hb_029281_010 Hb_000358_080 Hb_000358_080 Hb_000490_030--Hb_000358_080 Hb_000490_030--Hb_006091_030 Hb_000340_510 Hb_000340_510 Hb_000490_030--Hb_000340_510 Hb_002874_070 Hb_002874_070 Hb_000490_030--Hb_002874_070 Hb_002039_010--Hb_002890_340 Hb_004204_020 Hb_004204_020 Hb_002039_010--Hb_004204_020 Hb_004452_100 Hb_004452_100 Hb_002039_010--Hb_004452_100 Hb_000152_820 Hb_000152_820 Hb_002039_010--Hb_000152_820 Hb_000184_130 Hb_000184_130 Hb_002039_010--Hb_000184_130 Hb_015306_020 Hb_015306_020 Hb_002039_010--Hb_015306_020 Hb_000421_260 Hb_000421_260 Hb_002890_340--Hb_000421_260 Hb_002890_340--Hb_015306_020 Hb_004046_010 Hb_004046_010 Hb_002890_340--Hb_004046_010 Hb_001720_050 Hb_001720_050 Hb_002890_340--Hb_001720_050 Hb_009111_050 Hb_009111_050 Hb_002890_340--Hb_009111_050 Hb_000418_100--Hb_001720_050 Hb_000062_240 Hb_000062_240 Hb_000418_100--Hb_000062_240 Hb_001030_120 Hb_001030_120 Hb_000418_100--Hb_001030_120 Hb_182026_020 Hb_182026_020 Hb_000418_100--Hb_182026_020 Hb_082609_020 Hb_082609_020 Hb_000418_100--Hb_082609_020 Hb_002609_110 Hb_002609_110 Hb_000418_100--Hb_002609_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
119.135 44.2704 17.9922 18.7621 135.801 164.319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
97.8134 59.0639 117.639 65.642 16.5669

CAGE analysis