Hb_001804_060

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1804: 107064-111698
Sequence    

Annotation

kegg
ID rcu:RCOM_1077560
description ATP binding protein, putative
nr
ID KDP26901.1
description hypothetical protein JCGZ_18059 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067JSG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18059 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17453: 106821-111657 , PASA_asmbl_17454: 109915-111594 , PASA_asmbl_17456: 107381-107628 , PASA_asmbl_17457: 106914-109521
cDNA
(Sanger)
(ID:Location)		 007_O20.ab1: 106821-108407 , 017_H12.ab1: 106821-108452

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001804_060 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_18059 [Jatropha curcas]
2 Hb_001369_060 0.073303783 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
3 Hb_162275_010 0.0769286549 - - -
4 Hb_003638_140 0.0803460441 - - protein binding protein, putative [Ricinus communis]
5 Hb_098709_010 0.084072922 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
6 Hb_000784_090 0.0899037965 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
7 Hb_000365_360 0.0940301651 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
8 Hb_000035_380 0.0959779829 - - -
9 Hb_033491_010 0.0962747637 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
10 Hb_001493_100 0.0963114384 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
11 Hb_002681_140 0.0964093687 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
12 Hb_000442_160 0.0969843773 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
13 Hb_006637_060 0.0979994583 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
14 Hb_134226_010 0.0990191098 - - 40S ribosomal protein S21e, putative [Ricinus communis]
15 Hb_002215_050 0.1008739153 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
16 Hb_015026_120 0.1010915131 - - hypothetical protein TRIUR3_03502 [Triticum urartu]
17 Hb_001437_040 0.1010939685 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
18 Hb_002207_100 0.1013978448 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
19 Hb_000700_090 0.1027139823 - - protein with unknown function [Ricinus communis]
20 Hb_000282_060 0.1046123456 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]

Gene co-expression network

sample Hb_001804_060 Hb_001804_060 Hb_001369_060 Hb_001369_060 Hb_001804_060--Hb_001369_060 Hb_162275_010 Hb_162275_010 Hb_001804_060--Hb_162275_010 Hb_003638_140 Hb_003638_140 Hb_001804_060--Hb_003638_140 Hb_098709_010 Hb_098709_010 Hb_001804_060--Hb_098709_010 Hb_000784_090 Hb_000784_090 Hb_001804_060--Hb_000784_090 Hb_000365_360 Hb_000365_360 Hb_001804_060--Hb_000365_360 Hb_002215_050 Hb_002215_050 Hb_001369_060--Hb_002215_050 Hb_033491_010 Hb_033491_010 Hb_001369_060--Hb_033491_010 Hb_001369_060--Hb_000365_360 Hb_001369_060--Hb_003638_140 Hb_001369_060--Hb_098709_010 Hb_000057_060 Hb_000057_060 Hb_162275_010--Hb_000057_060 Hb_003638_030 Hb_003638_030 Hb_162275_010--Hb_003638_030 Hb_002391_110 Hb_002391_110 Hb_162275_010--Hb_002391_110 Hb_000696_110 Hb_000696_110 Hb_162275_010--Hb_000696_110 Hb_127979_010 Hb_127979_010 Hb_162275_010--Hb_127979_010 Hb_003638_140--Hb_002215_050 Hb_024714_030 Hb_024714_030 Hb_003638_140--Hb_024714_030 Hb_011496_010 Hb_011496_010 Hb_003638_140--Hb_011496_010 Hb_000608_120 Hb_000608_120 Hb_003638_140--Hb_000608_120 Hb_098709_010--Hb_000365_360 Hb_001437_040 Hb_001437_040 Hb_098709_010--Hb_001437_040 Hb_002207_100 Hb_002207_100 Hb_098709_010--Hb_002207_100 Hb_098709_010--Hb_033491_010 Hb_000700_090 Hb_000700_090 Hb_098709_010--Hb_000700_090 Hb_000784_090--Hb_033491_010 Hb_000481_010 Hb_000481_010 Hb_000784_090--Hb_000481_010 Hb_000784_090--Hb_002215_050 Hb_002249_140 Hb_002249_140 Hb_000784_090--Hb_002249_140 Hb_001493_100 Hb_001493_100 Hb_000784_090--Hb_001493_100 Hb_000784_090--Hb_001369_060 Hb_000317_430 Hb_000317_430 Hb_000365_360--Hb_000317_430 Hb_002014_080 Hb_002014_080 Hb_000365_360--Hb_002014_080 Hb_000035_380 Hb_000035_380 Hb_000365_360--Hb_000035_380 Hb_118419_020 Hb_118419_020 Hb_000365_360--Hb_118419_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
103.236 24.5114 10.1025 5.40486 71.2232 130.604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.8897 75.8043 61.4842 19.6895 9.00623

CAGE analysis